YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FIG1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAISMIWFF TKRMPRIFAL AFNLISIFLL IFLLIGCYNP SNQSTFLVKY KFDDNSPFYT  60
   61 IIEKSYEKSN TTLGLEEVII RSGYMGVCID NIPSQYSSYN NMTTFSNSIC YARKNLSSVP 120
  121 LYRDLEIQLS NIASSSSKTQ SSVVLNILKL AQLTSVNVIH PYVLMATVIL TILMFLFILY 180
  181 VTVPKLPFKL AVNKFLLLLS STIVLTWGIG AMWTHVGINA SYRLVPSSSM NIITVKKGKK 240
  241 AAVMAWFSFA FLLLDSVVLW LIFLRDRKSL KDEIDNVPCA QNRYNNYSSD SSTLHSKV

Type	Start	End	Confidence
Cytoplasmic	1	16	0.95
Transmembrane Helix	17	38	0.92
Non-Cytoplasmic	39	161	0.97
Transmembrane Helix	162	183	0.93
Cytoplasmic	184	194	0.81
Transmembrane Helix	195	216	0.89
Non-Cytoplasmic	217	241	0.93
Transmembrane Helix	242	264	0.92
Cytoplasmic	265	298	0.97