YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPFRILGDL SHLTSILILI HNIKTTRYIE GISFKTQTLY ALVFITRYLD LLTFHWVSLY  60
   61 NALMKIFFIV STAYIVVLLQ GSKRTNTIAY NEMLMHDTFK IQHLLIGSAL MSVFFHHKFT 120
  121 FLELAWSFSV WLESVAILPQ LYMLSKGGKT RSLTVHYIFA MGLYRALYIP NWIWRYSTED 180
  181 KKLDKIAFFA GLLQTLLYSD FFYIYYTKVI RGKGFKLPK

Type	Start	End	Confidence
Cytoplasmic	1	35	0.51
Transmembrane Helix	36	51	0.55
Non-Cytoplasmic	52	61	0.58
Transmembrane Helix	62	81	0.89
Cytoplasmic	82	98	0.89
Transmembrane Helix	99	117	0.90
Non-Cytoplasmic	118	123	0.70
Transmembrane Helix	124	144	0.83
Cytoplasmic	145	152	0.81
Transmembrane Helix	153	174	0.82
Non-Cytoplasmic	175	185	0.82
Transmembrane Helix	186	206	0.86
Cytoplasmic	207	219	0.82