YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEO1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	130	0.93
Transmembrane Helix	131	151	0.69
Non-Cytoplasmic	152	178	0.77
Transmembrane Helix	179	198	0.68
Cytoplasmic	199	204	0.62
Transmembrane Helix	205	224	0.77
Non-Cytoplasmic	225	231	0.51
Transmembrane Helix	232	252	0.69
Cytoplasmic	253	265	0.66
Transmembrane Helix	266	287	0.87
Non-Cytoplasmic	288	302	0.62
Transmembrane Helix	303	322	0.93
Cytoplasmic	323	375	0.70
Transmembrane Helix	376	398	0.61
Non-Cytoplasmic	399	411	0.61
Transmembrane Helix	412	432	0.81
Cytoplasmic	433	438	0.70
Transmembrane Helix	439	459	0.82
Non-Cytoplasmic	460	466	0.73
Transmembrane Helix	467	486	0.92
Cytoplasmic	487	498	0.82
Transmembrane Helix	499	519	0.91
Non-Cytoplasmic	520	531	0.81
Transmembrane Helix	532	554	0.93
Cytoplasmic	555	593	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSIVKEIIV DPYKRLKWGF IPVKRQVEDL PDDLNSTEIV TISNSIQSHE TAENFITTTS  60
   61 EKDQLHFETS SYSEHKDNVN VTRSYEYRDE ADRPWWRFFD EQEYRINEKE RSHNKWYSWF 120
  121 KQGTSFKEKK LLIKLDVLLA FYSCIAYWVK YLDTVNINNA YVSGMKEDLG FQGNDLVHTQ 180
  181 VMYTVGNIIF QLPFLIYLNK LPLNYVLPSL DLCWSLLTVG AAYVNSVPHL KAIRFFIGAF 240
  241 EAPSYLAYQY LFGSFYKHDE MVRRSAFYYL GQYIGILSAG GIQSAVYSSL NGVNGLEGWR 300
  301 WNFIIDAIVS VVVGLIGFYS LPGDPYNCYS IFLTDDEIRL ARKRLKENQT GKSDFETKVF 360
  361 DIKLWKTIFS DWKIYILTLW NIFCWNDSNV SSGAYLLWLK SLKRYSIPKL NQLSMITPGL 420
  421 GMVYLMLTGI IADKLHSRWF AIIFTQVFNI IGNSILAAWD VAEGAKWFAF MLQCFGWAMA 480
  481 PVLYSWQNDI CRRDAQTRAI TLVTMNIMAQ SSTAWISVLV WKTEEAPRYL KGFTFTACSA 540
  541 FCLSIWTFVV LYFYKRDERN NAKKNGIVLY NSKHGVEKPT SKDVETLSVS DEK