YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMT2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.94
Transmembrane Helix	59	81	0.66
Non-Cytoplasmic	82	115	0.69
Transmembrane Helix	116	134	0.60
Cytoplasmic	135	151	0.77
Transmembrane Helix	152	174	0.77
Non-Cytoplasmic	175	197	0.72
Transmembrane Helix	198	219	0.93
Cytoplasmic	220	230	0.87
Transmembrane Helix	231	251	0.82
Non-Cytoplasmic	252	252	0.37
Transmembrane Helix	253	272	0.72
Cytoplasmic	273	283	0.53
Transmembrane Helix	284	308	0.85
Non-Cytoplasmic	309	609	0.64
Transmembrane Helix	610	631	0.92
Cytoplasmic	632	642	0.91
Transmembrane Helix	643	662	0.92
Non-Cytoplasmic	663	673	0.79
Transmembrane Helix	674	696	0.86
Cytoplasmic	697	709	0.86
Transmembrane Helix	710	729	0.95
Non-Cytoplasmic	730	758	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSTGYS KNNAAHIKQE NTLRQRESSS ISVSEELSSA DERDAEDFSK EKPAAQSSLL  60
   61 RLESVVMPVI FTALALFTRM YKIGINNHVV WDEAHFGKFG SYYLRHEFYH DVHPPLGKML 120
  121 VGLSGYLAGY NGSWDFLLEI YPDYLDYVKM RLFNASFSAL CVPLAYFTAK AIGFSLPTVW 180
  181 LMTVLVLFEN SYSTLGRFIL LDSMLLFFTV ASFFSFVMFH NQRSKPFSRK WWKWLLITGI 240
  241 SLGCTISVKM VGLFIITMVG IYTVIDLWTF LADKSMSWKT YINHWLARIF GLIIVPFCIF 300
  301 LLCFKIHFDL LSHSGTGDAN MPSLFQARLV GSDVGQGPRD IALGSSVVSI KNQALGGSLL 360
  361 HSHIQTYPDG SNQQQVTCYG YKDANNEWFF NRERGLPSWS ENETDIEYLK PGTSYRLVHK 420
  421 STGRNLHTHP VAAPVSKTQW EVSGYGDNVV GDNKDNWVIE IMDQRGDEDP EKLHTLTTSF 480
  481 RIKNLEMGCY LAQTGNSLPE WGFRQQEVVC MKNPFKRDKR TWWNIETHEN ERLPPRPEDF 540
  541 QYPKTNFLKD FIHLNLAMMA TNNALVPDPD KFDYLASSAW QWPTLNVGLR LCGWGDDNPK 600
  601 YFLLGTPAST WASSVAVLAF MATVVILLIR WQRQYVDLRN PSNWNVFLMG GFYPLLAWGL 660
  661 HYMPFVIMSR VTYVHHYLPA LYFALIILAY CFDAGLQKWS RSKCGRIMRF VLYAGFMALV 720
  721 IGCFWYFSPI SFGMEGPSSN FRYLNWFSTW DIADKQEA