YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FUN26
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	96	0.91
Non-Cytoplasmic	97	113	0.84
Transmembrane Helix	114	136	0.91
Cytoplasmic	137	149	0.87
Transmembrane Helix	150	171	0.93
Non-Cytoplasmic	172	176	0.86
Transmembrane Helix	177	199	0.88
Cytoplasmic	200	212	0.79
Transmembrane Helix	213	234	0.94
Non-Cytoplasmic	235	243	0.85
Transmembrane Helix	244	265	0.93
Cytoplasmic	266	342	0.98
Transmembrane Helix	343	366	0.88
Non-Cytoplasmic	367	374	0.81
Transmembrane Helix	375	395	0.88
Cytoplasmic	396	413	0.86
Transmembrane Helix	414	433	0.94
Non-Cytoplasmic	434	448	0.77
Transmembrane Helix	449	466	0.75
Cytoplasmic	467	488	0.66
Transmembrane Helix	489	512	0.86
Non-Cytoplasmic	513	517	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSADTDTI KKPILAVPEP ALADTHSEEI SRSGEEHESE NNEHSDEEGD NYSEREQSVS  60
   61 TEPLDTLPLR KKLKNLSYIT FFAIGIGLLW PWNCILSASQ YFKHDIFKDT SIWAKIFTSS 120
  121 MMSFSTISSM LFNIYLAKRQ YKYSRRVING LVWEIIVFTV MCFFTILHFL LPKWFNFMFI 180
  181 MMLVVISSMG TAMTQNGIMA IANVFGSEYS QGVMVGQAVA GVLPSLVLFA LAFIENSSVS 240
  241 TTGGILLYFF TTTLVVTICV VMFSVSKISR KVNENWNVED GHITDVLLGS LRSNEEEIRI 300
  301 VGRIDQMEDE DHRRTNGTRD DNDEGEELQL KVPFEVLFAK LKYLVLSIFT TFVVTLVFPV 360
  361 FASATYVTGL PLSNAQYIPL IFTLWNLGDL YGRVIADWPM FRDQKFTPRK TFIYSLLRVA 420
  421 AIPLFLMFTA ITSSSSGDEE HNGSVIVDLC YMLLQFLFGV TNGHVISMSF MKVPEQLDND 480
  481 DEKEAAGGFT NIFVSTGLAL GSIISYVFVF IIDFIIR