YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BI4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRKSNVYL SLVNSYIIDS PQPSSINYWW NMGSLLGLCL VIQIVTGIFM AMHYSSNIEL  60
   61 AFSSVEHIMR DVHNGYILRY LHANGASFFF MVMFMHMAKG LYYGSYRSPR VTLWNVGVII 120
  121 FILTIATAFL GYCCVYGQMS HWGATVITNL FSAIPFVGND IVSWLWGGFS VSNPTIQRFF 180
  181 ALHYLVPFII AAMVIMHLMA LHIHGSSNPL GITGNLDRIP MHSYFIFKDL VTVFLFMLIL 240
  241 ALFVFYSPNT LGQNMALLLI TYVINILCAV CWKSLFIKYQ WKIYNKTTYY FIIQNILNTK 300
  301 QLNNFVLKFN WTKQYNKMNI VSDLFNPNRV KYYYKEDNQQ VTNMNSSNTH LTSNKKNLLV 360
  361 DTSETTRTTK NKFNYLLNIF NMKKMNQIIT KRHYSIYKDS NIRFNQWLAG LIDGDGYFCI 420
  421 TKNKYASCEI TVELKDEKML RQIQDKFGGS VKLRSGVKAI RYRLQNKEGM IKLINAVNGN 480
  481 IRNSKRLVQF NKVCILLNID FKEPIKLTKD NAWFMGFFDA DGTINYYYSG KLKIRPQLTI 540
  541 SVTNKYLHDV EYYREVFGGN IYFDKAKNGY FKWSINNKEL HNIFYTYNKS CPSKSNKGKR 600
  601 LFLIDKFYYL YDLLAFKAPH NTALYKAWLK FNEKWNNN

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.46
Transmembrane Helix	32	55	0.87
Cytoplasmic	56	75	0.49
Transmembrane Helix	76	98	0.85
Non-Cytoplasmic	99	110	0.49
Transmembrane Helix	111	136	0.84
Cytoplasmic	137	143	0.42
Transmembrane Helix	144	167	0.79
Non-Cytoplasmic	168	179	0.53
Transmembrane Helix	180	204	0.87
Cytoplasmic	205	223	0.55
Transmembrane Helix	224	246	0.91
Non-Cytoplasmic	247	254	0.48
Transmembrane Helix	255	276	0.91
Cytoplasmic	277	638	0.56