YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AI5_ALPHA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQRWLYSTN AKDIAVLYFM LAIFSGMAGT AMSLIIRLEL AAPGSQYLHG NSQLFNVLVV  60
   61 GHAVLMIFFL VMPALIGGFG NYLLPLMIGA TDTAFPRINN IAFWVLPMGL VCLVTSTLVE 120
  121 SGAGTGWTVY PPLSSIQAHS GPSVDLAIFA LHLTSISSLL GAINFIVTTL NMRTNGMTMH 180
  181 KLPLFVWSIF ITAFLLLLSL PVLSAGITML LLDRNFNTSF FEVSGGGDPI LYEHLFWFFG 240
  241 HPEVYILIIP GFGIISHVVS TYSKKPVFGE ISMVYAMASI GLLGFLVWSH HMYIVGLDAD 300
  301 TRAYFTSATM IIAIPTGIKI FSWLMNPFSK DKNKNKNKKL IRNYQKMNNN NMMKTYLNNN 360
  361 NMIMMNMYKG NLYDIYPRSN RNYIQPNNIN KELVVYGYNL ESCVGMPTYT NIVKHMVGIP 420
  421 NNILYIMTGI LLTDGWIDYT SKKDLDKKTI MEINCRFRLK QSMIHSEYLM YVFMLLSHYC 480
  481 MSYPKMKIAK VKGKSYNQLE FYTRSLPCFT ILRYMFYNGR VKIVPNNLYD LLNYESLAHM 540
  541 IMCDGSFVKG GGLYLNLQSF TTKELIFIMN ILKIKFNLNC TLHKSRNKYT IYMRVESVKR 600
  601 LFPMIYKYIL PSMRYKFDIM LWQKKYNMIN

Type	Start	End	Confidence
Cytoplasmic	1	13	0.98
Transmembrane Helix	14	36	0.92
Non-Cytoplasmic	37	58	0.88
Transmembrane Helix	59	84	0.87
Cytoplasmic	85	100	0.89
Transmembrane Helix	101	123	0.89
Non-Cytoplasmic	124	147	0.89
Transmembrane Helix	148	168	0.95
Cytoplasmic	169	183	0.87
Transmembrane Helix	184	207	0.89
Non-Cytoplasmic	208	240	0.87
Transmembrane Helix	241	261	0.88
Cytoplasmic	262	270	0.84
Transmembrane Helix	271	292	0.90
Non-Cytoplasmic	293	302	0.84
Transmembrane Helix	303	323	0.92
Cytoplasmic	324	630	0.84