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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109507007
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEDSGKRGN TMAERRQLFA EMRAQDLDRI RLSTYRTACK LRFVQKKCNL HLVDIWNVIE  60
   61 ALRENALNNL DPNIELNVAR LEAVLSTMFY QLNKRMPSTH QIHVEQSISL LLNFLLAAFD 120
  121 PEGHGKISVF AVKMALATLC GGKIMDKLRY IFSMISDSSG VMVYGRYDQF LREVLKLPTA 180
  181 VFEGPSFGYT EQSARSCFSQ QKKVTLNGFL DTLMSDPPPQ CLVWLPLLHR LANVENVFHP 240
  241 VECSYCHSES MMGFRYRCQQ CHNYQLCQDC FWRGHAGGSH SNQHQMKEYT SWKSPAKKLT 300
  301 NALSKSLSCA SSREPLHPMF PDQPEKPLNL AHIVPPRPVT SMNDTLFSHS VPSSGSPFIT 360
  361 RSSPPKDSEV EQNKILARAA PAFLKGKGIH YSLNVADRLA DEHVLIGLYV NMLRNNPSCM 420
  421 LESSNRLDEE HRLIARYAAR LAAESSSSQP TQQRSAPDVS FTIDANKQQR QLIAELENKN 480
  481 REILQEIQRL RVEHEQASQP TPEKAQQNPT LLAELRLLRQ RKDELEQRMS ALQESRRELM 540
  541 VQLEGLMKLL KEEELKQGTQ GAGSPRSSPS HTISRPIPMP IRSTSACSTP AYTPQDSLTG 600
  601 VGGDVQEAFA QSKCSLLYCV LLVPAKSFTN TFSSHYKYIS EDVASETEST VDSEFSRTQF 660
  661 EDLVPSPTSE KSFLAQIHAR KPGYIHGGAT STMHGDMVPE DGDPYPQPED GNYENESVRQ 720
  721 LENELQMEEY LKQKLQDEAY QRHVSTETRL KHPCPVTETK WRVLFWGFVI VGGFLSLALQ 780
  781 IYFWGLF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle