YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109512898
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQQPEPKS QRDSGLGAVA AAAAVVAAAA PGGLSLSLSP GASGSSGSDG DSVPVSPQPA  60
   61 PPSPPAAPCL PPLAHHPNXP PPPPPPPPQH LAAPAHQPQP AAQLHRTTNF FIDNILRPDF 120
  121 GCKKEQPLPQ LLVASAAAGG GAAGGGSRVE RDRSQTGAGR DPVHSLGTRA SGAASLLCAP 180
  181 DANCGPPDGS QPATAVGAGA SKAGNPAAAA AAAAAAAAAA VAAAAAAASK PSDSGGGSGG 240
  241 SAGSPGAQGA KFPEHNPAIL LMGSANGGPV VKTDSQQPLV WPAWVYCTRY SDRPSSGPRT 300
  301 RKLKKKKNEK EDKRPRTAFT AEQLQRLKAE FQANRYITEQ RRQTLAQELS LNESQIKIWF 360
  361 QNKRAKIKKA TGIKNGLALH LMAQGLYNHS TTTVQDKDES E

Type	Start	End	Confidence
Cytoplasmic	1	14	0.61
Transmembrane Helix	15	36	0.62
Non-Cytoplasmic	37	401	0.88