YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109512896
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQQPEPKS QRDSGLGAVA AAAAVVAAAA PGGLSLSLSP GASGSSGSDG DSVPVSPQPA  60
   61 PPSPPAAPCL PPLAHHPNLP PHPPPPPPPP PPPPPPQHLA APAHQPQPAA QLHRTTNFFI 120
  121 DNILRPDFGC KKEQPLPQLL VASAAAGGGA AGGGSRVERD RSQTGAGRDP VHSLGTRASG 180
  181 AASLLCAPDA NCGPPDGSQP ATAVGAGASK AGNPAAAAAA AAAAAAAAVA AAAAAASKPS 240
  241 DSGGGSGGSA GSPGAQGAKF PEHNPAILLM GSANGGPVVK TDSQQPLVWP AWVYCTRYSD 300
  301 RPSSGPRTRK LKKKKNEKED KRPRTAFTAE QLQRLKAEFQ ANRYITEQRR QTLAQELSLN 360
  361 ESQIKIWFQN KRAKIKKATG IKNGLALHLM AQGLYNHSTT TVQDKDESE

Type	Start	End	Confidence
Cytoplasmic	1	14	0.60
Transmembrane Helix	15	36	0.61
Non-Cytoplasmic	37	409	0.89