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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109512443, gi...
Protein type: Transmembrane
Type Confidence: 0.79
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNSEDQPSG GTTVLQRLLQ EQLRYGNPSE NRSLLAIHQQ ATGNSSPFST GSGNPVPQND  60
   61 VLSSQDHHQQ LVAHPARQEP QGQEIQSENG VMEKQVSPRM QNNEELPTYE EAKVQSQYFR 120
  121 GQQHASVGAA FYVTGVTNQK MRTEGRPSVQ RLTPGKMHQD EGLRDLKQGH VRSLSERLMQ 180
  181 MSLATSGVKA HPPVTSAPLS PPQPNDLYKN PTSSSEFYKA QGPPPSQHSL KSMEHRGPPP 240
  241 EYPFKGVPSQ SVVCKSQEPG HFYSEHRLNQ PGRTEGQLMR YQHPPEYGAA RATQDIASLS 300
  301 FSARNSQPHS PTSSLTAGAA SLPLLQSPPS TRLSSGQHGL VSNQGDHSAH LPRHQQHLLP 360
  361 NQSHQGDHYR HPQPSLTPAQ QQPGEAYSAM PRAQQAAAYQ PMPADPFAIV SRAQQMVEIL 420
  421 SDENRNLRQE LDGCYEKVAR LQKVETEIQR VSEAYETLVK SSSKREALEK AMRNKLEGEI 480
  481 RRMHDFNRDL RDRLETANKQ LAEKEYEGSE DTRKTISQLF AKHKENQREK EKLEAELATA 540
  541 RSTNEDQRRH IEIRDQALSN AQAKVVKLEE ELKKKQVYVD KVEKMQQALV QLQAACEKRE 600
  601 QLEHRLRTRL ERELESLRIQ QRQGNSQPTN ASEYNAAALM ELLREKEERI LALEADMTKW 660
  661 EQKYLEENVM RHFALDAAAT VAAQRDTTVI SHSPNTSYDT ALEARIQKEE EEILMANKRC 720
  721 LDMEGRIKTL HAQIIEKDAM IKVLQQRSRK EPSKTEQLSS MRPAKSLMSI SNAGSGLLVH 780
  781 SSTLTGVPIM EEKRDDKSWK GSLGILLGGD YRAEPVPSTP SPVPPSTPLL SAHSKTGSRD 840
  841 CSTQTERGSE STKTAAVTPI SVPMAGPVAA AAPAAAINAT AATNTATAAT NTTIMVAAAP 900
  901 VAVAAAAAPA AATATPSPAN AAALAAAAAA AVTPATPVSA ATSVSAATSI SQAAPVSPAA 960
  961 PVSPAAPVAP ATSAPVPSPA SIPAPATAQA SAPTPTQAST PAPIEPPTAV PTPTPALVQA1020
 1021 EGPASPGASS GPRRLSTPNL MCNPDKPDGP AFHSSTLERK TPIQILGQEP DAEMVEYLI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle