YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109509362
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.85
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQFALWKC MPHGILLASL LIVSWGQYDD DWQYEDGCEL PRGGWELNSG PLEEQSRSGT  60
   61 ILVDNMLIKG TAGGPDPTIE LSLKDNVDYW VLLDPVKQML FLNSTGRVLD RDPPMNIHSI 120
  121 VVQVQCVNKK VGTVIYHEVR IVVRDRNDNS PTFKHESYYA TVNELTPVGT TIFTGFAGDN 180
  181 GATDIDDGPN GQIEYVIQYN PEDPTSNDTF EIPLMLTGNV VLRKRLNYED KTRYYVIIQA 240
  241 NDRAQNLNER RTTTTTLTVD VLDGDDLGPM FLPCVLVPNT RDCRPLTYQA AIPELRTPEE 300
  301 LNPILVTPPI QAIDQDRNIQ PPSDRPGILY SILVGTPEDY PRFLHMHPRT AELTLLEPVN 360
  361 RDFHQKFDLV IKAEQDNGHP LPAFASLHIE ILDENNQSPY FTMPSYQGYI LESAPVGATI 420
  421 SESLNLTTPL RIVALDKDIE DTKDPELHLF LNDYTSVFTV TPTGITRYLT LLQPVDREEQ 480
  481 QTYTFLITAF DGVQESEPVV VNIRVMDAND NTPTFPEISY NVYVYTDMSP GDSVIQLTAV 540
  541 DADEGSNGEI SYEILVGSKG DFVINRTTGL VSIAPGVELV VGQTYALTVQ ASDNAPPAER 600
  601 RHSICTVYIE VLPPNNQSPP RFPQLMYSLE VSEAMRIGAV LLNLQATDRE GDPITYAIEN 660
  661 GDPQRVFNLS ETTGILSLGK ALDRESTDRY ILIVTASDGR PDGTSTATVN IVVTDVNDNA 720
  721 PVFDPYLPRN LSVVEEEANA FVGQVRATDP DAGINGQVHY SLGNFNNLFR ITSNGSIYTA 780
  781 VKLNREARDH YELVVVATDG AVHPRHSTLT LYIKVLDIDD NSPVFTNSTY TVVVEENLPA 840
  841 GTAFLQIEAK DVDLGANVSY RIRSPEVKHL FALHPFTGEL SLLRSLDYEA FPDQEASITF 900
  901 LVEAFDIYGT MPPGIATVTV IVKDMNDYPP VFSKRIYKGM VAPDAVKGTP ITTVYAEDAD 960
  961 PPGLPASRVR YRVDDVQFPY PASIFDVEED SGRVITRVNL NEEPTTIFKL VVVAFDDGEP1020
 1021 VMSSSATVRI LVLHPGEIPR FTQEEYRPPP VSELAARGTV VGVISAAAIN QSIVYSIVAG1080
 1081 NEDDKFGINN VTGVIYVNSP LDYETRTSYV LRVQADSLEV VLANLRVPSK SNTAKVYIEI1140
 1141 QDENDHPPVF QKKFYIGGVS EDARMFTSVL RVKATDRDTG NYSAMAYRLI IPPIKEGKEG1200
 1201 FVVETYTGLI KTAMLFHNMR RSYFKFQVIA TDDYGKGLSG KADVLVSVVN QLDMQVIVSN1260
 1261 VPPTLVEKKI EDLTEILDRY VQEQIPGAKV VVESIGARRH GDAFSLEDYS KCDLTVYAID1320
 1321 PQTNRAIDRN ELFKFLDGKL LDINKDFQPY YGEGGRILEI RTPEAVTSIK KRGESLGYTE1380
 1381 GALLALAFII ILCCIPAILV VLVSYRQFKV RQAECTKTAR IQSAMPAAKP AAPVPAAPPP1440
 1441 PPPPPPPGAH LYEELGESAM HNLFLLYHFE QSRGNNPVPE DRSSHRDGMA FSSSTTESHE1500
 1501 PAHVEGPLDN QANPARTFSF LPDEDDLSTH NPLYMESIGQ RSTNSDLQPG TEFGELFVPR1560
 1561 TQVKSQSLRG PREKIQRVWN QSVRFPRRLM WKTPNRPETI DLVEWQITRQ RAECEKTRCH1620
 1621 PSQQGSSNLM VTTEDARGSE KEGGHRDTLI VQQTEQLKSL SSGSSFSSSW SHFSFSTLPT1680
 1681 ISRAVELGSE PDVVTSPADC TLELSPPRRP RVLNSLGSKR ETPTCASDTE TKRNSFEMVP1740
 1741 HPPSISAPLP QLPLPQPPIA FTTFPLPLSS PNPPRPQLLT FSLPISTTPA SSLPPPPPPS1800
 1801 LPPPPRPPAP RLFPLPPSTS VPSTDSISTP AAKCTASVTH ARETMSTTQP PASNPPCGAE1860
 1861 PHRHPKGILR HVKNLAELEK SVSNMYSHIE KNCPPTELSK LHPFCPAEKT NMKITCDQSQ1920
 1921 ETLVRVVEGI DVQTHSQSTS L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle