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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109506196
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPLLLAFI SVIPVAVQLL DSRQFLIYNE DHKRCVDALS AISVQTATCN PEAESQKFRW  60
   61 VSESQIMSVA FKLCLGVPSK TDWASVTLYA CDSKSEFQKW ECKNDTLFGI KGTELYFNYG 120
  121 NRQEKNIKLY KGSGLWSRWK VYGTTDDLCS RGYEAMYSLL GNANGAVCAF PFKFENKWYA 180
  181 DCTSAGRSDG WLWCGTTTDY DTDKLFGFCP LQFEGSKRLW NTDPLTGILY QINSKSALTW 240
  241 HQARASCKQQ NAELLSVTEI HEQMYLTGLT SSLTSGLWIG LNSLSLSTGW QWAGGSPFRY 300
  301 LNWLPGSPSS EPGKSCVSLN PGKNAKWENL ECVQKLGYIC KKGNNTLNPF IIPSESDVPT 360
  361 ACPNQWWPYA GHCYRIYREE KKIQKYALQA CRKEGGDLAS IHSIEEFDFI FSQLGYEPND 420
  421 ELWIGLNDIK IQMYFEWSDG TPVTFTKWLP GEPSHENNRQ EDCVVMKGKD GYWADRACEQ 480
  481 PLGYICKMVS QIHTVIPEGA EKGCRKGWKR HGFYCYLIGS TLSTFADANQ TCTNEKAYLT 540
  541 TVEDRYEQAF LTSLVGLRPE KYFWTGLSDV QNKGTFRWTV DEQVQFTHWN ADMPGRKAGC 600
  601 VAMKTGVAGG LWDVLSCEEK AKFVCKHWAE GVTRPPEPTT TPEPKCPEDW GTTSKTSMCF 660
  661 KLYAKGKHEK KTWFESRDFC KAIGGELASI KSKDEQQVIW RLITSSGSYH ELFWLGLTYG 720
  721 SPSEGFTWSD GSPVSYENWA YGEPNNYQNV EYCGELKGDP GMSWNDINCE HLNNWICQIQ 780
  781 KGKTLLPEPT PAPQDNPPVT ADGWVIYKDY QYYFSKEKET MDNARAFCKK NFGDLATIKS 840
  841 ESEKKFLWKY INKNGGQSPY FIGLLISLDK KFIWMDGSKV DFVAWATGEP NFANDDENCV 900
  901 TMYTNSGFWN DINCGYPNNF ICQRHNSSIN ATAMPTTPPT PGGCKEGWHL YNNKCFKIFG 960
  961 FAEEEKKTWK EARKACIGLK GNLVSIENAK EQAFVTYHMR DSTFNAWTGL NDVNSEHTFL1020
 1021 WTDGRGVHYT NWGKGYPGGR RSSLSYEDVD CVVVIGGNSR EAGTWMDSTC DSKQGYICQT1080
 1081 QTDPSVPISP TTAPKDGFVK YGKSSYALMK LKSPWHEAEK YCKDRTSLLA SILDPYSNAF1140
 1141 AWMKMHPFNV PIWIALNSNL TNNEYTWTDK WRVRYTNWGT DEPKLKSACV YMDVDGYWKT1200
 1201 SYCNESFYFL CKKSDEIPAT EPPQLPGKCP ESEQTAWIPF HGHCYYIESS FTRSWGQASL1260
 1261 ECLRMGASLV SIETAAESSF LSYRVEPLKS KTNFWIGMFR NVEGKWLWLN DNPVSFVNWK1320
 1321 TGDPSGERND CVVLSSSSGL WNNIHCTSYK GFICKMPKII DPVTTHSSIT TKADQRKMDP1380
 1381 QPKGSSKAAG VVIVVLLIVI GAGVAAYFFY KKRRVLHIPQ EATFENTLYF NSNPSPGTSD1440
 1441 TKDLVGNIEQ NEHAVI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle