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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109506186, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARTHRGPP ENWAPPFACL CCVSAVLGML WSPVSLAFNL DVDKLTVYSG PEGSYFGYSL  60
   61 DFYIPDARTA SVLVGAPKAN TSQPDIVEGG AVYYCPWPAE RSAQCKQIPF DTTNNRKIRV 120
  121 NGTKEPIEFK SNQWFGATVR AHKGKVVACA PLYHWRTLKP NPAKDPVGTC YVAIQNFSAY 180
  181 AEHSPCRNSN VDPEGQGYCQ AGFSLDFYKN GDLIVGGPGS FYWQGQVITV SVADIIANYS 240
  241 FKDILRKLAA EKQTDVAPAS YDDSYLGYSV AAGEFTGDSL QELVAGIPRG AQNFGYVSII 300
  301 NSTDMTFIQN FTGEQMASYF GYTVVVSDVN NDGMDDILVG APLFMEREFE SNPREVGQVY 360
  361 LYLQVSALLF QDPQVLTGTE TFGRFGSSVA HLGDLNQDGY NDIAIGVPFA GKDQRGKVLI 420
  421 YNGNARGLHS KPSQVLQGIW GSQTIPSGFG FSLRGDADID KNDYPDLLVG AFGEGKVAVY 480
  481 RARPVVTVDA QLLLHPMIIN LENKTCQIPE FPTPVACFSL RVCASIAGQS ISNTVALMAE 540
  541 VQLDFLKQKG AIKRTLFLHN HQSHLIFPFV MRQQKSLHCQ DFMVYLRDET EFRDKLSPIN 600
  601 VSLNYSLDDS TFEDGLEVKP ILNHYRENVV TEQAHILVDC GEDNLCVPDL RLSARPDKQE 660
  661 IIIGDENHLM LIINARNEGE GAYEAELFVM IPEEADYVGI ERNNKGLRLL SCEYKMENVT 720
  721 RMVVCDLGNP MVTGTNFSLG LRFAVPRLEK TNMSINFDLQ IRSSNKDNPD SNFVSVQINV 780
  781 TAVAQVEIRG VSHPPQIVLP IHNWEPAEEP HKEEEVGPLV EHIYELHNIG PSTISDSILE 840
  841 VGWPFSAREE FLLYVFHLQT LGPLQCQTNP EINPQDIKPA ASPEDTPELS AFLRNATIPH 900
  901 LVRKRDVPVV QPHRQSPAKI LNCTNIDCLQ ISCAVGRLGG GESAVLKVRS RLWAHTFLQR 960
  961 KNDPYALASL VSFEVKKIPY KEQPAKLPAG STAIKTSVIW ATPNVSFSIP LWVIILAILL1020
 1021 GLLVLAILTL ALWKCGFFDR ARPPQDEMTD REQLTSDKTP EA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle