YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109504421, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKMLAAVSR VLAGAAQKPI LNGKVLVASR NFANDATFEI KKCDLHRLEE GPPVTTVLTR  60
   61 EDGLKYYRMM QTVRRMELKA FQLYKQKIIR GFCHLCDGQE ACCVGLEAGI NPTDHLITAY 120
  121 RAHGFTFTRG LPVRAILAEL TGRRGGCAKG KGGSMHMYAK NFYGGNGIVG AQVPLGAGIA 180
  181 LACKYNGKDE VCLTLYGDGA ANQGQIFEAY DMAALWKLPC IFICENNRYG MGTSVERAAA 240
  241 STDYYKRGDF IPGLRVDGMD ILCVREATKF AAAYCRSGKG PILMELQTYR YHGHSMSDPG 300
  301 VSYRTREEIQ EVRSKSDPIM LLKDRMVNSN LASVEELKEI DVEVRKEIED AAQFATADPE 360
  361 PPLEELGYHI YSSDPPFEVR GANQWIKFKS VI

Type	Start	End	Confidence
Signal Peptide	1	16	0.92
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	392	0.99