YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109504682
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKSRSRNV LREPDTAVNR KEDTDPSRGL RRHGFPLLGS HPTTLISGAC AGFSLHSRRV  60
   61 PILPKRLGRT PAGTRPVTFW SIDVRRPHLT SLFGAQDFEE RITENPSGGF IKCLKSRGAG 120
  121 ERAGAAGSSL DAGEDRAPSR ALRPPPSSHS GRGRRRRPLC PSGRASWGPC LLRARPRSAP 180
  181 PSAPLFVPAA GGTPVPEPRS LCSRSVHRGR ERGTSEWPSK GTSLRSAGKE SADAWRGGVK 240
  241 APRPEARRPS AAGDPAPTAR SMARGWVRPS RVPLCVRAVW TAAALLLWTP WTAGEVEDSE 300
  301 AIDTLGQLDG PDSPLPTLKG YFLNFLEPVN NITIVQGQTA ILHCKVAGNP PPNVRWLKND 360
  361 APVVQEPRRV IIRKTEYGSR LRIQDLDTTD TGYYQCVATN GLKTITATGV LYVRLGPTHS 420
  421 PNHNFQDDDQ EDGFCQPYRG IACARFIGNR TIYVDSLQMQ GEIENRITAA FTMIGTSTHL 480
  481 SDQCSQFAIP SFCHFVFPLC DARSRAPKPR ELCRDECEVL ENDLCRQEYT IARSNPLILM 540
  541 RLQLPKCEAL PMPESPDAAN CMRIGIPAER LGRYHQCYNG SGTDYRGMAS TTKSGHQCQP 600
  601 WALQHPHSHR LSSTEFPELG GGHAYCRNPG GQMEGPWCFT QNKNVRVELC DVPPCSPRDG 660
  661 SKMGILYILV PSIAIPLVIA CLFFLVCMCR NKQKASASTP QRRQLMASPS QDMEMPLISQ 720
  721 HKQAKLKEIS LSTVRFMEEL GEDRFGKVYK GHLFGPAPGE PTQVVAIKTL KDKAEGPLRE 780
  781 EFRQEAMLRA RLQHPNIVCL LGVVTKDQPL SMVFSYCCHG DLHEFLVMRS PHSDVGSTDD 840
  841 DRTVKSALEP PDFVHVVAQI AAGMEFLSSH HVVHKDLATR NVLVYDKLNV RISDLGLFRE 900
  901 VYSADYYKLM GNSLLPIRWM SPEAVMYGKF SIDSDIWSYG VVLWEVFSYG LQPYCGYSNQ 960
  961 DVVEMIRSRQ VLPCPDDCPA WVYALMIECW NEFPSGRPRF KDIHGRLRSW GNLSNYNSSA1020
 1021 QTSGASNTTQ TSSLSTSPVS NVSNARYMAP KQKAQPFPQP QFIPMKGQIR PLVPPAQLYI1080
 1081 PVNGYQPVPA YGAYLPNFYP VQIPMQMAPQ QVPPQMVPKP SSHHSGSGST STGYVTTAPS1140
 1141 NTSVADRAAL LSEGTEDVQN MPEDVAQSPV QEAEEEEEGS VPETELLGDS DTLQVNEAHV1200
 1201 HLEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle