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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109499717, gi...
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAAGCRAPR AAGEGSGLAP GGSLLPRRRG PGQLAASECP AAPVSAPPAA APGRALGRPS  60
   61 RRRWAAMLLF GLLVAGVADG CDLVPRHLRG RRASGSAGAA ASPSAAAAGE RQALLTDPCM 120
  121 SLSPPCFTEE DRFSLEALQT IHKQMDDDKD GGIEVDESDE FIREDMKYKD ATNKHSHLHR 180
  181 EDKHITVEDL WKQWKTSEVH NWTLEDTLQW LIEFVELPQY EKNFRDNNVK GTTLPRIAVH 240
  241 ETSFMISQLK ISDRSHRQKL QLKALDVVLF GPLTRPPHNW MKDFILTISI VIGVGGCWFA 300
  301 YTQNKTSKEH VAKMMKDLES LQTAEQSLMD LQERLEKAQE ENRTVAVEKQ NLERKMMDEI 360
  361 NYAKEEACRL RELREGAECE LSRRQYAEQE LEQVRMALKK AEKEFELRSS WSVPDALQKW 420
  421 LQLTHEVEVQ YYNIKRQNAE MQLAIAKDEA EKIKKKRSTV FGTLHVAHSS SLDEVDHKIL 480
  481 EAKKALSELT TCLRERLFRW QQIEKICGFQ IAHNSGLPSL TSSLYSDHSW VVMPRVSIPP 540
  541 YPIAGGVDDL DEDTPPIVSQ FPGTVAKPAG SLARSSSLCR SRRSIVPSSP QSQRAQLPAH 600
  601 APLAAHPRHP HHPQHSLPSP DPDILSVSSC PALYRNEEEE EAIYFTAEKQ WEVPDTASEC 660
  661 DSLNSSIGRK QSPPSSLEIY QTLSSRKISR DELSLEDSSR GDSPVTADVS RGSPECVGLT 720
  721 ETKSMIFSPA SRVYNGILEK SCSMHQLSSG IPVPNPRHTS CSLAGSDSKP VQEASSVSRV 780
  781 GSIPHDLCHN GEKSKKPSKI KSLFKKKSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle