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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109500014
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAPRGQGG GGGAGEPGGA ERAAGPGGRR GFRACGEEFA CPELEALFRG YTLRLEQAAT  60
   61 LKALAVLSLL AGALALAELL GAPGPAPGLA KGSHPVHCIL FLALFVVTNV RSLQVSQLQQ 120
  121 VGQLALFFSL TFALLCCPFA LGGPARSSAG GAMGSAVAEQ GVWQLLLVTF VSYALLPVRS 180
  181 LLAIGFGLVV AASHLLVTAA LVPAKRPRLW RTLGANALLF FGVNMYGVFV RILTERSQRK 240
  241 AFLQARNCIE DRLRLEDENE KQERLLMSLL PRNVAMEMKE DFLKPPERIF HKIYIQRHDN 300
  301 VSILFADIVG FTGLASQCTA QELVKLLNEL FGKFDELATE NHCRRIKILG DCYYCVSGLT 360
  361 QPKTDHAHCC VEMGLDMIDT ITSVAEATEV DLNMRVGLHT GRVLCGVLGL RKWQYDVWSN 420
  421 DVTLANVMEA AGLPGKVHIT KTTLACLNGD YEVEPGHGHE RNTFLRTHNI ETFFIVPSHR 480
  481 RKIFPGLILS DIKPAKRMKF KTVCYLLVQL MHCRKMFKAE IPFSNVMTCE DDDKRRALRT 540
  541 ASEKLRNRSS FSTNVVYTTP GTRVNRYISR LLEARQTELE MADLNFFTLK YKHVEREQKY 600
  601 HQLQDEYFTS AVVLALILAT LFGLIYLLVI PQSVAVLLLL VFSICFLVAC TLYLHITRVQ 660
  661 CFPGCLTIQI RTALCVFIVV LIYSVAQGCV VSCLPWAWSS HSNSSLVVLA AGGRRTVLPA 720
  721 LPCESAHHGL LCCLVGTLPL AIFLRVSSLP KMILLSGLTT SYILVLELSG YTKVGGGALS 780
  781 GRSYEPIMAI LLFSCTLALH ARQVDVRLRL DYLWAAQAEE ERDDMERVKL DNKRILFNLL 840
  841 PAHVAQHFLM SNPRNMDLYY QSYSQVGVMF ASIPNFNDFY IELDGNNMGV ECLRLLNEII 900
  901 ADFDELMDKD FYKDLEKIKT IGSTYMAAVG LAPTAGTRAK KSISSHLSTL ADFAIDMFDV 960
  961 LDEINYQSYN DFVLRVGINV GPVVAGVIGA RRPQYDIWGN TVNVASRMDS TGVQGRIQVT1020
 1021 EEVHRLLNRC SYQFVCRGKV SVKGKGEMLT YFLEGRTDGS SSHSRSLRLE RRMFPYGRGG1080
 1081 GGQARRPPLC PAAGPPIKPG LSPAPTSQYL SSTAAGKEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle