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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109494297, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTCRGEQPM LTLLWFLLAI AGCLADLNEV PQVTVQPMST VQKLGGTVIL GCVVEPPWVN  60
   61 VTWRFNGKEL NGSDDALGVL ITRGTLVIAA LNNHTVGRYQ CVARMPAGAV ASVPATVTLA 120
  121 NLQDFKLDVQ HVIEVDEGNT AVIACHLPES HPKAQVRYSV KQEWLEASRD NYLIMPSGNL 180
  181 QIVNASQEDE GTYKCAAYNP VTQEVKTSGS SDRLRVRRST AEAARIIYPL EAQTVIVTKG 240
  241 QSLILECVAS GIPPPRVTWA KDGSSIAAYN KTRFLLSNLL IDTTSEEDSG TYRCMASNGV 300
  301 GDPGAAVILY NVQVFEPPEV TVELSQLVIP WGQSAKLTCE VRGNPPPSVL WLRNAVPLSS 360
  361 NQRLRLSRKA LRVVSVRPED EGVYQCMAEN AVGSAHAVVQ LRTARPDTTL RPGRDTKPIA 420
  421 ATPPMPPSRP NRPDQMLREQ PGLVKPPTSV QPTSLKCLGE EQVAPAEAPV ILSSPRTSKT 480
  481 DSYELVWRPR HEGSSRAPIL YYVVKHRKVT NSSDDWIISG IPANQHHLTL TRLDPGSLYE 540
  541 VEMAAYNCAG EGQTAMVTFR TGRRPKPEIV ASKEQQIQRD DPGASLQSSS QPDHGRLSPP 600
  601 EAPDRPTIST ASETSVYVTW IPRGNGGFPI QSFRVEYKKL KKVGDWILAT SAIPPSRLSV 660
  661 EITGLEKGIS YKFRVRALNM LGESEPSAPS RPYVVSGYSG RVYERPVAGP YITFTDAVNE 720
  721 TTIMLKWMYI PASNNNTPIH GFYIYYRPTD SDNDSDYKKD MVEGDRYWHS ISHLQPETSY 780
  781 DIKMQCFNEG GESEFSNVMI CETKARKFSG QPGRPPPLTL APPQPPPLEA MERPMGTGAM 840
  841 VARASDLPYL IVGVVLGSIV LIIVTFIPFC LWRAWSKQKH TTDLGFPRSA LLSSSCQYTM 900
  901 VPLGGLPGHQ ANGQPYLSGI GGRACVSRLH GSRGYPAATV GCPGRKLQQH CPGELAQRED 960
  961 SNSLLRQPIV SNGYDLQNQQ VARGTKSGSE EGSFLYTLPD DSTHQLLQPQ DCCHLQKQPV1020
 1021 TTCQTAVRRA PEGPGLEASW DPQYHSGPRC CLGLVPVEEV DSSDSCQVGG GDCCPQHPSG1080
 1081 TYTGQELGVR LSPSPSVHVS FETPPPTI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle