YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109498866
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLQLENRK EKTPELDSTV ADCRVSEDGQ TLTPERQRLR QRLPDQVFPA YEGEQRAFYQ  60
   61 RKRRRPPLCS VLILGVPPPS LLGWGPHSPL LTLASLHSRE NSCSYQSPQS MPWRQILPLT 120
  121 SEIPQCAGCN QHILDKFILK VLDRHWHSSC LKCADCQMQL ADRCFSRAGS VYCKEDFFKR 180
  181 FGTKCTACQQ GIPPTQVVRK AQDFVYHLHC FACIICNRQL ATGDEFYLME DGRLVCKEDY 240
  241 ETAKQNDDSE AGAKRPRTTI TAKQLETLKN AYKNSPKPAR HVREQLSSET GLDMRVVQVW 300
  301 FQNRRAKEKR LKKDAGRHRW GQFYKSVKRS RGGSKQEKES SAEDCGVSDS ELSFREDQIL 360
  361 SELGHTNRIY GNVGDVTGGQ LMNGSFSMDG TGQSYQDLRD GSPYGIPQSP SSISSLPSHA 420
  421 PLLSGLDYTV DSNLGVIAHP GQGVSQTLRA MAGGPTSDLS TGSSVGYPDF PTSPASWLDE 480
  481 MDHPPF

Type	Start	End	Confidence
Cytoplasmic	1	67	0.76
Transmembrane Helix	68	87	0.73
Non-Cytoplasmic	88	486	0.99