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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109498740, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMKLKKTAY LLALYLSSSL LICVKNSFCN KNNTRCLSNS CQNNSTCKRF PQDSSCCLDT  60
   61 ANDLDTDCED LKDPCLSSPC QGTATCVNIP GERSFLCQCP PGYSGLTCDT ATNSCGGNLC 120
  121 QHGGTCHKDP EHPVCICPPG YAGRFCETDH NECDSSPCHN GAVCQDRING YSCFCVPGYQ 180
  181 GRHCDLEVDE CVSDPCMNEA VCLNEIGRYT CVCPQEYSGV NCELEIDECG SQPCLHGATC 240
  241 RDALGGYFCD CAPGFLGDHC ELNFNECESQ PCLHGGLCVD GRNSYHCDCT GSGFRGIHCE 300
  301 SLIPLCWSKP CHNDATCEDT VDSYICHCWP GYTGALCETD INECSSNPCQ FGGECAELSS 360
  361 QDLYGNTAGL PSSFSYLGAS GYVCICLPGF TGRHCEEDID ECLPNPCLNG GTCQNLPGNY 420
  421 TCHCPFDDTS RTFYGGEDCS EILLGCTHHQ CLNNGKCIPH FQNGQHEFTC QCPSGYAGPL 480
  481 CETVTTLSFE SNGFLWVTSG SHTSMGSECN ISLKFQTVQP NALLLVRGNK DMSVKLELLD 540
  541 GCVHLSIEVW NQSKVLLYIS HNTSDGEWHL VEVTFAETIT LALNGSSCKE KCTTKSSVSI 600
  601 ENHQSICALQ NSFLGGLPMG TASDSMSVLN IYNVPSTPSF VGCLQDIRFD LNHITLESIS 660
  661 SGLSSNVKAG CLRKDWCESQ PCQNRGRCIN LWQGYRCECD RPYAGSNCLK EYVAGRFGQD 720
  721 DSTGYAAFKV NDNFGQNFNL SMFVRTRQPL GFLLTLGNST YQYVCVWLEH GSLALKTPGS 780
  781 PKLVANFFLS DGNAHLISLR IKPNEIELYQ SSQNLGFMSV PAWTIQRGDV IFIGGLPDRE 840
  841 KTEAYGGFLK GCIQDVRLNS QNLEFFPNST NSAQHDPVLV NVTQGCPGDN VCKSNPCHNG 900
  901 GVCHSLWDDF SCSCPTNTSG RACDEVQWCQ LSPCPPIAEC QLVPQGFECI ANAAFSGLSS 960
  961 EILFRSNGNI TRELTNITFG FRTQDTNAVI LHAEKEPEFL NISIQDSRLL FQLRSGNSFY1020
 1021 TLHLTGSQLV NDGAWHRVTF SMIDPRAQTS LWQMEVDDQT PFVISAVATG NLNFLKDNTD1080
 1081 IYVGDQAVDN QKGLQGCLST VQIGGLYLSY FESLHGFTSK PQEEQFLKVS TNVALTGCLP1140
 1141 LSACHSSPCL HGGICEDSYS SYRCACLPGW SGAHCEINVD ECSSSPCVHG NCSDGVAAYH1200
 1201 CRCEPGYTGG NCEAEVDTCK SHQCANGATC VSGAQGYSCL CLGNFTGRFC RHSRLPSTVC1260
 1261 GNEKTNFTCY NGGSCSVFQE DWKCVCRPGF TGEWCEENIN ECASDPCING GLCRDLVNRF1320
 1321 QCICDVAFAG ERCELDLADD RLVGIITAVG SGTLVLLFIL LLAAIVSLIA SNKRATQGTY1380
 1381 SPSGQEKAGP RVEMWSRMPP PALERLI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle