YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149058660, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	74	0.77
Transmembrane Helix	75	96	0.57
Non-Cytoplasmic	97	97	0.27
Transmembrane Helix	98	117	0.60
Cytoplasmic	118	118	0.22
Transmembrane Helix	119	144	0.68
Non-Cytoplasmic	145	171	0.56
Transmembrane Helix	172	199	0.78
Cytoplasmic	200	205	0.46
Transmembrane Helix	206	231	0.69
Non-Cytoplasmic	232	247	0.53
Transmembrane Helix	248	269	0.88
Cytoplasmic	270	279	0.61
Transmembrane Helix	280	301	0.73
Non-Cytoplasmic	302	332	0.58
Transmembrane Helix	333	352	0.86
Cytoplasmic	353	376	0.56
Transmembrane Helix	377	397	0.84
Non-Cytoplasmic	398	404	0.54
Transmembrane Helix	405	429	0.85
Cytoplasmic	430	464	0.66
Transmembrane Helix	465	495	0.78
Non-Cytoplasmic	496	790	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTRPRYVV DRAAYSLSLF DDEFEKKDRA YPVGEKLRNT FRCSSAKLKA IVFGLLPVLS  60
   61 WLPKYKIKDY IIPDLLGGLS GGCIQVPQGM AFALLANLPA VNGLYSSFFP LLTYFFLGGI 120
  121 HQMVPGTFAV ISILVGNICL QLAPESKFQI FNATTNETYV DTVAMEAERL HVSATLACLT 180
  181 AVIQMALGFM QFGFVAIYLS ESFIRGFMTA AGLQILISVL KYIFGLTIPS YTGPGSIVFT 240
  241 FIDICKNLPH TNIASLVFAL VSGVFLVLVK ELNARYMHKI HFPIPTEMIV VVVATAISGS 300
  301 CKMPKKYHMQ IVGEIRHGFP IPVAPMVSQW KDMVGTAFSL AIVGYVINLA MGRTLANKHG 360
  361 YDVDSNQEMI ALGCSNFFGS FFKIHVICCA LSVTLAVDGA GGKSQVASLC VSLVVMITML 420
  421 VLGSYLYPLP KAVLGALIAV NLKNSLKQLT DPYYLWRKSK LDCCVWVVSF LSSFFLSLPY 480
  481 GVAVGVAFSI LVVIFQTQFR NGSTLAQVMD TDIYVNPKTY NRVQEIEGVK IVTYCSPLYF 540
  541 ANSEIFRQKV IAKTGMDPQK VLLAKQKYLR KQEKRMAVPT QQRKSLFMKT KTVSLQELQQ 600
  601 DFESAASTDP NNNQAPVADA HISYITFSPD SSATAASELP TSTQSPREAS DALASVPPFV 660
  661 TFHTLILDMS GVSFVDLMGI KALAKLSSTY EKIGVQIFLV NIHAQVYNDI SQGGIFEDGC 720
  721 VQRNHVFPSI HDAVLFAQAN AREAPAHNFQ GAPGDTEFSL YDSEEDGSSY WDLEQEMFGT 780
  781 MFHTETLTAL