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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109498403
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVFESVGHH LYQPHTFMEK IKICKFSGQC KLLPKYSFAK PTVVSDKSEF AVGTTWKYKC  60
   61 LPGYFRKSFT ITCLESSKWS DAQQFCKRKP CMNPQEPLHG SVHINTGITF GSTITYSCNK 120
  121 GYRLIGDSSA TCIISDNTVM WDNSVPICEL IPCESPPAIS NGYFQSSSRD SFFYGMVATY 180
  181 YCHVGKNREK LFDLVGEKSI YCTSKDNQVG IWNSPPPQCI ARVKCPMPEI ENGDVESGFK 240
  241 PSFFLNDTVM FKCKSGFIMK GSSIVWCQPD SKWSPPLPTC FRVKSCDAIP NQLLNGRVLL 300
  301 PHNLQLGAEV SFVCDLGFQL KGKSSSQCVP EGETVIWNNK FPVCELISML TLPLLYFSEL 360
  361 SCDPPPEVNN TRRLYYSLPV LPGTVVRYTC LPGYRLIGEK AIFCISKDQV TATWDKATPI 420
  421 CEPWNKMSAC SKPIVPGGII NPGSRPPFKH GDSVTVTCKA NFTMKGSKTV WCRANKMWGP 480
  481 TPLPVCESDF PLECPSLPTI HNGHHTGQHV EKFVAGLSVT YSCEPGYLLV GKKTIKCLSS 540
  541 GAWDDVIPTC KEAKCERPEK LPNGQVKEPP SLRVGTTVYF SCNEGYELQG QPSSKCVIVE 600
  601 QKAVWTKKPV CKEILCPPPP PVLNGRHSGR FSGNVPYGNN VTYMCDPSPE KGVNFTLIGE 660
  661 KTIYCTNSSE KTGIWSGPAP YCKLSISEAQ CLRPQINRGQ ILSILKESYS YNDTVAFSCE 720
  721 PGFTLKGSGR IRCSAQGTWK PPVPVCEKGC QAPPKIINGQ KEDRYFLNFD PGTSIRYSCD 780
  781 PGYFLVGEDT IHCTSEGKWT PIPPQCKVAE CKPVGPHVFE RPQNHFIRPA INSSCDEGFQ 840
  841 ISESAYQLCQ GTIPWFIEIR LCKEITCPPP PIILNGTHTW RSSEDVPYGT VITYMCYPGS 900
  901 EEGVKFKLIG EQTIHCTSDS RGRGSWSSPA PLCKLSLPAV QCTEVHVENG VKLTDNKAPY 960
  961 FYNNSVTFKC RDGYILIGSS QIRCKANNTW DPEAPHCKKE GCEPMRKLPG ISDHSLIKLV1020
 1021 NRTCQNGYQL TGYTYEKCQN AENGTWFQKI AVCTVILCPP PPTIANGSHT GMMAEHFLYG1080
 1081 NEVSYECDKG FYLLGEKSLQ CKGHGSWSGP PPQCLQSSPL THCPDPEVKY GYKLNKTHSA1140
 1141 YSHNDIIHVV CNQGFIMNGS HLIRCHTNNT WLPGVPTCIR TASLGCQSPP TIPNGNHTGG1200
 1201 TIARFSPGMS VMYSCYQGYL MAGEARLICT HEGTWSHPAP YCKEVNCSFP EDTNGIQKGF1260
 1261 QPGKTYRFGT TVTLECEDGY SLEGSPQSQC QDENQWNPPL AICKNRSTVP LVSGISAGSA1320
 1321 FIILISVIFF IILKSRERNY YTKTRPKDGA LHLETREVYA VDPYNPAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle