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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109492913
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSYTCTPAP VLLHLFFHTC APKPVLLHLF FHTCAPTPVL LHLFFHTCAP TPVLLHLFFH  60
   61 TCAPTSVLPH LCSYICSSTP VLPHLCSYIS SSTPVLPHLC SYICSSTPVL LHLFFHTCAP 120
  121 TPVLLHLFFH TCAPTSVLPH LCSHTCAPTS VLPHLCSHTC APTSLLPHLC SYIYLFFHTC 180
  181 APTPVLLHLF FHTCAPTPVL LHLFFHTCAP TSVLPHLCSY ICSSTPVLLH LFFHTCAPTP 240
  241 VLLHLFFHTC FSAPFNCLCD RVPSMAEDHK TMGNAESQNV DHEFYGEKHA SLGRKHTSRS 300
  301 LRLSHKTRRT RHASSGKAIH RNSEVSTRSS STPSIPQSLA ENGLEPFSQE GALDDFGDPI 360
  361 WVDRVDMGLR PVSYTDSSVT PSVDGSIVLT AASVQSMPDS EESRLYGDDA AYLAEGGRRQ 420
  421 RPYTSNGPTF METASFKKKR SKSADIWRED SLEFSLSDLS QEHLTSNEEI LGSAEEKDCE 480
  481 EARGMETGAS PRQLSTCQRA NSLGDLYAQK NSGVKANGGP RNRFSSYCRN LVSDIPDLAK 540
  541 HKMPPAAVET PTYSNYNTLP CRKSHCLSEG ATNPQISLSK SMQGRRAKTT QDVNTGEGRS 600
  601 CRQWDRRGHH GHGPPVQEIQ CHQLQLLASH RPSLCGQRQR QQFDWGCCTP GGVRELQAGT 660
  661 GDEHHQQREP GGGWLCAQRR AEQRNPQLPG PVGHPADGCA GHCAEGWRAG SQELPGHKKN 720
  721 KKVESATRRK WKHYWVSLKG CTLFFYESDG RSGIDHNSVP KHAVWVENSI VQAVPEHPKK 780
  781 DFVFCLSNSL GDAFLFQTTS QTELENWITA IHSACAAAVA RHHHKEDTLR LLKSEIKKLE 840
  841 QKIDMDEKMK KMGEMQLSSV TDAKKKKTIL DQIFVWEQNL EQFQMDLFRF RCYLASLQGG 900
  901 ELPNPKRLLG FASRPTKVAM GRLGIFSVSS FHALVSSTTG SIGSQRLSPA VVSESLSHHS 960
  961 EFRASFVLLT RFPFFKMMLL SMQVFGEGTD AVKRSLEGIF DDSVPDGKRE KEVVLPSVHQ1020
 1021 HNPDCDIWVH EYFTPSWFCL PNNQPALTVV RPGDTARDTL ELICKAHQLD HSAHYLRLKF1080
 1081 LMENKMQFYV PQPEEDIYEL LYKEIEICPK VTQNIHIEKS DAAADNYGFL LSSVDEDGVR1140
 1141 RLYVNSVKET GLASKKGLKA GDEILQINNR AAGTLNSSML KDFLSQPSLG LLVRTYPEPE1200
 1201 GGVELLENPP HRVDGPVDLG ESPLTFLTSN PGHSLSSEQG SSAETAPEEG EGPDLESSDE1260
 1261 TDHSSKSTEQ VTAFCRSLHE MSPSDSSPSP QDATSPQLAT TRQLSDADKL RKVICELLET1320
 1321 ERTYVKDLNC LMERYLKPLQ KETFLTQDEL DVLFGNLTEM VEFQVEFLKT LEDGVRLVPD1380
 1381 LEKLEKVDQF KKVLFSLGGS FLYYADRFKL YSAFCASHTK VPKVLVKAKT DTAFKAFLDA1440
 1441 QNPRQQHSST LESYLIKPIQ RVLKYPLLLR ELFALTDAES EEHYHLDVAI KTMNKVASHI1500
 1501 NEMQKIHEEF GAVFDQLIAE QTGEKKEVAD LSMGDLLLHT SVIWLNPPAS LGKWKKEPEL1560
 1561 AAFVFKTAVV LVYKDGSKQK KKLVGSHRLS IYEEWDPFRF RHMIPTEALQ VRALPSADAE1620
 1621 ANAVCEIVHV KSESEGRPER VFHLCCSSPE SRKDFLKSVH SILRDKHRRQ LLKTESLPSA1680
 1681 QQYVPFGGKR LCALKGARPA MSRAVSAPSK SLGRRRRRLA RNRFTIDSDA ISASSPEKEP1740
 1741 QQPPGGGDTD RWVEEQFDLA QYEEQDDIKE TDILSDDDEF CESAKGASVD IDLQEQLQAA1800
 1801 SISQRARGRK TLDSHASRMT QLKKQAALSG INGGLESASE EVIWVRREDF APSRKLNTEI1860
 1861 

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