YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109492034, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFPEPELWA GREGPVIDRL NYRLISYLRP RALIGCSLTS SNPAARRWAP EGGGCGWRCA  60
   61 SDKPESHFQP QVDFVPTIGG VAPPLHDRRQ TSSSALLLME PHLLGLLLGL LLSGTRVLAG 120
  121 YPIWWSLALG QQYTSLASQP LLCGSIPGLV PKQLRFCRNY IEIMPSVAEG VKLGIQECQH 180
  181 QFRGRRWNCT TIDDSLAIFG PVLDKATRES AFVHAIASAG VAFAVTRSCA EGTSTICGCD 240
  241 SHHKGPPGEG WKWGGCSEDA DFGVLVSREF ADARENRPDA RSAMNKHNNE AGRTTILDHM 300
  301 HLKCKCHGLS GSCEVKTCWW AQPDFRAIGD FLKDKYDSAS EMVVEKHRES RGWVETLRAK 360
  361 YALFKPPTER DLVYYENSPN FCEPNPETGS FGTRDRTCNV TSHGIDGCDL LCCGRGHNTR 420
  421 TEKRKEKCHC VFHWCCYVSC QECIRIYDVH TCK

Type	Start	End	Confidence
Cytoplasmic	1	102	0.84
Transmembrane Helix	103	125	0.78
Non-Cytoplasmic	126	453	0.80