YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109491340
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFLEELLG DKLVTGGGEE VDVHSLGARG IALLGLYFGC SLSAPCAQLS ASLAAFYSRL  60
   61 RXXXXXXXMA GANAGFAAIP EPLRHLLAVI FITIVKDSLQ WLPLIFDMPW VGLPQPEKKK 120
  121 KSLKLWNKYR VSNIPSLIFL DATTGKVVCR NGLLVIRDDP EGLEFPWGPK PFREVIAGPL 180
  181 LRNNGQSLES SSLEGSHVGV YFSAHWCPPC RSLTRVLVES YRKIKEAGQK FEIIFVSADR 240
  241 SEESFKQYFS EMPWLAVPYT DEARRSRLNR LYGIQGIPTL IVLDPQGEVI TRQGRVEVLN 300
  301 DEDCREFPWH PKPVLELSDS NAVQLNEGPC LVLFVDSEDD GESEAAKQLI QPIAEKIIAK 360
  361 YKAKEEEAPL LFFVAGEDDM TDSLRDYTNL PEAAPLLTIL DMSARAKYVM DVEEITPAIV 420
  421 ETFVNDFLAE KLKPEPI

Type	Start	End	Confidence
Cytoplasmic	1	32	0.46
Transmembrane Helix	33	56	0.62
Non-Cytoplasmic	57	437	0.85