YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109491338
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFLEELLG DKLVTGGGEE VDVHSLGARG IALLGLYFGC SLSAPCAQLS ASLAAFYSRL  60
   61 RGPLLCGPGP GGGLGSSREP EHRARYSLVF LYLAMIQKSW RDFECPEPWV GLPQPEKKKK 120
  121 SLKLWNKYRV SNIPSLIFLD ATTGKVVCRN GLLVIRDDPE GLEFPWGPKP FREVIAGPLL 180
  181 RNNGQSLESS SLEGSHVGVY FSAHWCPPCR SLTRVLVESY RKIKEAGQKF EIIFVSADRS 240
  241 EESFKQYFSE MPWLAVPYTD EARRSRLNRL YGIQGIPTLI VLDPQGEVIT RQGRVEVLND 300
  301 EDCREFPWHP KPVLELSDSN AVQLNEGPCL VLFVDSEDDG ESEAAKQLIQ PIAEKIIAKY 360
  361 KAKEEEAPLL FFVAGEDDMT DSLRDYTNLP EAAPLLTILD MSARAKYVMD VEEITPAIVE 420
  421 TFVNDFLAEK LKPEPI

Type	Start	End	Confidence
Cytoplasmic	1	32	0.50
Transmembrane Helix	33	51	0.53
Non-Cytoplasmic	52	436	0.95