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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109489115
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARASCAWNT LWLLQWTPLF LGPSAAPPAW ALNLDSVKFS VYTGPNGSHF GFSVDFHKDS  60
   61 HGSVSIVVGA PRALNANQEE TGGVFLCPWK ANNGTCTSLL FDLRDETRKL SLQTFQTFKT 120
  121 GQGLGASVLS WNDVIVACAP WQHWNVLEKY DEAEKTPVGG CFVAELQSGG RAEYSPCRSN 180
  181 TMSSVYSQGF SGDKRYCEAG FSLAVTQAGE LVLGAPGGYF FLGLLVRVPI ENIISSYRPG 240
  241 TLLWHVSNQR FSYDSSNPVY FHGYRGYSVA VGEFDGDLST TEYIFGAPTW SWTLGAVEIL 300
  301 DSYYQTLHRL HGEQMASYFG HSVAVTDVNG DGRHDLLVGA PLYMESRVDR KLAEVGRVYL 360
  361 FLQPKGLQAL SSPTLVLTGT QVYGRFGSAI APLGDLNRDG YNDVAVAAPY GGPSGQGQVL 420
  421 IFLGQSEGLS PRPSQVLDSP FPTGSGFGFS LRGSVDIDDN GYPDLIVGAY GASKVAVYRA 480
  481 QPVVMATVQL MVQDSLNPTL KNCVLEQTKT PVSCFNVQMC VGATGHNIPQ KLHLKAELQL 540
  541 DLQKPRQARR VLLLASRQAS LTLSLDLGGR NKPICHTIKA FLRDEADFRD KLSPIVLSLN 600
  601 VSLPPEETGV APAVVLHGVT HVQEQTRIIL DCGEDNLCVP QLQLTATAGD SPLLIGADNV 660
  661 LELKVNASND GEGAYEAELA VHLPPGAHYI RAFSNVKGFE RLVCTQKKEN ESRLALCELG 720
  721 NPMKKDTRIG ITMLVSVEIL EEAGDSVSFQ LQIRSKNSQN PNSEAVLLPV AVRAEAAVEL 780
  781 RGNSFPASLV VAAEEVDKEQ DGLDSWVSRV EHTYELHNNG PGTVNGLSLI IHLPGQSQPS 840
  841 DLLYILDVQP KGGLLCSTQP PPKLLKVDRR LTTPSPSSIR RIHHDRDRRE ASPQGSKQTE 900
  901 QQDPVLVSCN GSAPCTVVEC ELQEMVRGQR AMVTVQATLG LSILRQRPQE QFVLQSHAWF 960
  961 NVSSLPYSVP VVSLPSGQGL VQTHLLRALE ERDIPVWWVL VGVLGGLLLL TLLVLAMWKA1020
 1021 GFFKRNRPPL EEEEEEE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle