YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109487407
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	31	0.91
Non-Cytoplasmic	32	54	0.94
Transmembrane Helix	55	74	0.89
Cytoplasmic	75	81	0.76
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	110	0.72
Transmembrane Helix	111	130	0.93
Cytoplasmic	131	141	0.86
Transmembrane Helix	142	163	0.89
Non-Cytoplasmic	164	170	0.80
Transmembrane Helix	171	192	0.92
Cytoplasmic	193	265	0.99
Transmembrane Helix	266	284	0.84
Non-Cytoplasmic	285	304	0.75
Transmembrane Helix	305	325	0.89
Cytoplasmic	326	334	0.73
Transmembrane Helix	335	355	0.91
Non-Cytoplasmic	356	363	0.67
Transmembrane Helix	364	384	0.88
Cytoplasmic	385	391	0.76
Transmembrane Helix	392	414	0.89
Non-Cytoplasmic	415	426	0.86
Transmembrane Helix	427	448	0.90
Cytoplasmic	449	482	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNCCRTPPRD SWVYPTVILC LFGFFSMFRP SESFLIPFLS GPSKNLTSTE MTNEILPVWT  60
   61 YSYLAMLPPV FVLTDYLRYK PIIMLHVMAF TICYLFLLFG QSVMLMQTAE FFFGIVSATE 120
  121 IAYFAYIYSM VSPEHYQKVS SYCRSITLVS YTAGSVLAQL LVSLMNVPYS TLFYISLACV 180
  181 SVAFFVSLFL PMPKKSMFFH TKPNREACPK PLEPCTVLKE AHNNGAQPEL FANAQNLGDR 240
  241 EQDNSALRIF VYWFQDLKEC YSSKHLVYWS LWWAFATAGY NQILNFVQVL WEQKAPSKDS 300
  301 SIYNGAVEAI ATFGGALASF SVGYIKVDWD LLGELGLAVF SAVVAGSLLL MNYTLSIWVC 360
  361 YTGYVLVKSS YSFLITIAVF QIAVNLSLER YALVFGIDTF IALVIQTIMT MIVADQRGLQ 420
  421 LPVTTQFLVY GSYFAVIAGV FLIRSIYILY SAKCRKEVQN LATTQSPGEP YLQEPRDVST 480
  481 KF