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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109486763
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARQLPLLR ALLLPLLAGA HSAIVFIKEP SSQDALQGRR ALLRCEVEAP DPVHVYWLLN  60
   61 GVPVQDTERR FAQGSSLSFA AVDRLQDSGA FQCVARDNIT GEEARSANAS FNIKWIEAGP 120
  121 VVLKHPASAA EIQPQTQVTL RCHIDGHPRP TYQWFRDGTP LSDDQSTHTV SSKERNLTLR 180
  181 PASPEHSGLY SCCAHNAFGQ ACSSQNFTLS IADESFARVL LAPQDVVVAR NEEAMFHCQF 240
  241 SAQPPPSLQW VFEDETPITN RSRPPHLRKA MVFANGSLLL TQVRPRNAGV YRCIGQGQRG 300
  301 PPIVLEATLH LAEIEDMLPL EPRVFIAGGE ERVACPAPQG LPTPSVWWEH AGVRLPAHGR 360
  361 VHQKGLELVF ATIAESDAGV YTCHAANLAG QRRQDVNITV ATVPTWLRKP QDSQLEEGKP 420
  421 GYLHCLTQAT PKPTVIWYRN QMLISEDSRF EVSKNGTLRI NSVEVYDGTV YRCVSSTPAG 480
  481 SIEAQARVQV LEKLKFTPPP QPQQCMEFDK EATVPCSATG REKPTVKWVR ADGSSLPEWV 540
  541 TDNAGTLHFA RVTRDDAGNY TCIASNEPQG QIRAHVQLTV AVFITFKVEP ERTTVYQGHT 600
  601 ALLRCEAQGD PKPLIQWKGK DRILDPTKLG PRMHIFQNGS LVIHDVAPED SGSYTCIAGN 660
  661 SCNIRHTEAP LLVVDKPLME DSEGPGSPPP YKMIQTIGLS VGAAVAYIIA VLGLMFYCKK 720
  721 RCKAKRLQKQ PEGEEPEMEC LNGGPLQNGQ PSAEIQEEVA LTSLGSGPTA TNKRHSTGDK 780
  781 MHFPRASLQP ITTLGKSEFG EVFLAKAQGL DEGATETLVL VKSLQNKDEQ QQLDFRREFE 840
  841 MFGKLNHANV VRLLGLCREA EPHYMVLEYV DLGDLKQFLR ISKNKDEKLK SQPLSTKQKV 900
  901 ALCSQVALGM EHLSNNRFVH KDLAARNCLV SAQRQVKVSA LGLSKDVYNS EYYHFRQAWV 960
  961 PLRWMSPEAV LEGDFSTKSD VWAFGVLMWE VFTHGEMPHG GQGDDEVLAD LQAGKARLPQ1020
 1021 PEGCPSKLYR LMQRCWALNP KDRPSFSEIA STLGDGPADS KQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle