YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109484925
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVVTGSWF SEMHGLPLLC YLRAPPQRAL CEVSGAHFLA EGVPEQRSDG GSRGPILVAC  60
   61 VHLQESEGRA PWAAGSQGRM EPETRDHSTA FRNLHSSSGE MKLRKRKSTQ YVIAQEKRSR 120
  121 RRDLLGENTY LVLFTIALRI FNCFLVQTSF VPDEYWQSLE VAHHMVFNYG YLTWEWTERL 180
  181 RGYTYPLIFA SIYKILHLLG KDSVQLLIWI PRLGQALLSA VADLRLYSLT KQLENQEVAR 240
  241 WVFFCQLCSW FTWYCCTRTL TNTMETALTA VALFYYPLEG SRSKNSVKYS LLVALACVVR 300
  301 PTALIPWVPL LFRHLYQEQR KLHLTLHHFL PVGFITFSLS LIIDRIFFGQ WTLVQFNFLK 360
  361 FNVLQNLGTF YGSHPWHWYF SQGFPVVLGT HLPFFIHGCF LAPRRLNILL LAVLWTLLVY 420
  421 SMLGHKEFRF IYPVLPFCMV FCGYSLAHLK AWRKAALSFL LLSNVLLALY TGLVHQRGTL 480
  481 DVMSHIQKVC PRGPDPAPAS VFIMMPCHST PYYSHVHCPL SMRFLQCPPD LTGKTQYLDE 540
  541 ADTFYLNPLG WLQQEFHSNV SLPTHLVTFN VLEKEIHAFL TSGNYERTAT FFHTHWPERR 600
  601 TGSHIHVYER RLTSRVSTGG N

Type	Start	End	Confidence
Cytoplasmic	1	127	0.74
Transmembrane Helix	128	148	0.59
Non-Cytoplasmic	149	290	0.57
Transmembrane Helix	291	311	0.83
Cytoplasmic	312	323	0.86
Transmembrane Helix	324	348	0.85
Non-Cytoplasmic	349	377	0.91
Transmembrane Helix	378	397	0.92
Cytoplasmic	398	405	0.74
Transmembrane Helix	406	424	0.92
Non-Cytoplasmic	425	429	0.83
Transmembrane Helix	430	448	0.94
Cytoplasmic	449	455	0.77
Transmembrane Helix	456	474	0.87
Non-Cytoplasmic	475	621	0.78