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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109484845, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGCKVEGSP PVQVSWRKNG AELPEDTHTT LLANGSLLIH HLRLEQGESP SDEGDYECVA  60
   61 QNRFGLLVSR KARIQVATMS DFHVHPQAVM GEEGGVARFQ CQIHGLPKPL ITWEKNRVPI 120
  121 DTDDERYTLL PKGVLQITGL RAEDSGVFHC VASNMASVRV SHGARLTVSG SGSGTYKEPT 180
  181 ILVGPENLTL TVHQTAVLEC VATGNPRPIV SWSRLDGRPI GVEGIQVLGT GNLIISDVTV 240
  241 QHSGVYVCAA NRPGTRVRRT AQGRLVVQAP AEFVQHPQSI SRPAGTTAMF TCQAQGEPPP 300
  301 HVTWLKNGQV LGAGGHVRLK NNNSTLSISG VGPEDEAIYQ CVAENIAGSS QASARLTVLW 360
  361 AEGLPGPPRN VRAVSVSSTE VRVSWSEPLT HTKEIIGYVL HIRKAADSPK LEYQEAVSKS 420
  421 TFQHLVRDLE PSTAYSFYIK AYTPRGASLA SVPTLASTLG EAPVPPPLSV RLLGSSSLQL 480
  481 LWKPWPRLAQ HNGGFKLFYR PASAASFTGP ILLPGTVSSY NLSQLDPSTV YEVKLLAYNQ 540
  541 NGDGNATVRF VSLKGASERT ALTPPCDCRK EEVTNHTSTT GIVIGIHIGV TCIIFCVLFL 600
  601 LFGQRGRVLL CKDVENQLSP PQGPRSQRDP GILTLNGVNR GEGGQLGRDE KHVDAKELEQ 660
  661 LFPTTASAGQ PGSRSTDPTA PTPYEETQLS MVQLQDFNLA AGRTTETMSS CAGPGPVPAS 720
  721 QDVGLGLLSD RQTAQPLAVP APQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle