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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109483884
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLLPLLQA SLLLMLLLRL PEASTNLDWQ CPRIPFAASR DFSVKYVVPS FSAGGRVQAT  60
   61 AVYEDSKNSA VFVAIRNRLH VLGPDLQYIE SLTTGPIGDP GCQTCASCGP GPHGPPNDTD 120
  121 TLVLVMEPGL PALVSCGSTL QGRCFLHELE PQGEALHLAA PACLFSASNN KPEACTDCVA 180
  181 SHLGTRVTVV EQGHASYFYV ASSLDPELAA SFSPRSVSIR RLKSDTSGFQ PGFPSLSVLP 240
  241 KYLASYLIKY VHSFHSGDFV YFLTVQPMDV RSPPSALQTR LVRLNAIEPE IGDYRELVLD 300
  301 CHFAPKRRRR SGAPKSLQAY QVLQAAHSAP VDAKLALDLS ISEGQEVLFG VFVAVKDSSS 360
  361 GPNSVVCAFP INHLDNLIEE GVERCCHPSN SSLLTRRRGL DFFQTPSFCP NPPGAPSSRC 420
  421 HYFPLMVHDS FTRVDLFNGL LGSVKVTALH VTRLGNVTVA HMGTEDGRIL QVEIARSLNY 480
  481 LLYVSNFSLG SSGQPVHQDV SRLGNDLLFA SGDQVFKVPI QGPGCGHFLT CWRCLRAQRF 540
  541 MGCGWCGDRC GRQKECPGSW QQDYCPPEIT EFHPHSGPLR GTTRLTLCGS NFYLRPDGVV 600
  601 PEGTHQITVG QSPCRLLPKD SSTRRSGSQK EFIEELECEL EPLETQAVGT TNISLLITNM 660
  661 PAGKHFRVEG VSVREDFSFM EPMLTSIKPD FGPRAGGTYL TLEGQSLSVG TSRAVLVNGT 720
  721 QCRLEQVSEE KILCVTPPGA GTASVPLRLQ IGGAEVRGSR TFHYKEDPIV LDISPKCGYS 780
  781 GSHVMVHGQH LTSAWHLTVS FNDGQSIVES RCAGQFLEQQ HQCRLPEYMV RNPQGWATGN 840
  841 LSLWGDGAAG FTLPGFRFLP PPSLPRTGPV LLKPEEHSVK VEYIGLGAVA DCVTVNVTVG 900
  901 GEVCQHELRG DVVICPLPPS LQLGKDGVPL QVCVDGGCHI LGQVVRSGPG RASQRTLLIA 960
  961 LLALILLVAG LAIALVCNSR RRKKQLVLTP NLDDLTSRDL SPRAMSLSIF RSGSDYRNGL1020
 1021 ALSDFDNTAS RPPNHEESSE GQDGTSVPLL RTDSIRLQDL DKMLLAEVKD VLIPHEQVVI1080
 1081 HTDQVIGKGH FGVVYHGEYT DEAQNQIHCA IKSLSRITEV QEVEAFLREG LIMRGLHHPN1140
 1141 ILALIGIMLP PEGLPRVLLP YMRHGDLLRF IRSPQRNPTV KDLISFGLQV ACGMEYLAEQ1200
 1201 KFVHRDLAAR NCMLDESFTV KVADFGLARG ILDKEYYSVR QHRHARLPVK WMALESLQTY1260
 1261 RFTTKSDVWS FGVLLWELLT RGAPPYPHID PFDLSHFLVQ GRRLPQPEYC PDSLYQVMLR1320
 1321 CWEADPAARP TFRALVLEVE QVASSLLGDH YVQLTAAYVN VGPGAVDDGS VFPEQGQSSP1380
 1381 LHHRSTSRPR PLSEPPLPT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle