YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109483691
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.87
Transmembrane Helix	49	69	0.70
Non-Cytoplasmic	70	128	0.62
Transmembrane Helix	129	148	0.35
Cytoplasmic	149	161	0.58
Transmembrane Helix	162	178	0.39
Non-Cytoplasmic	179	210	0.61
Transmembrane Helix	211	232	0.80
Cytoplasmic	233	244	0.86
Transmembrane Helix	245	269	0.85
Non-Cytoplasmic	270	298	0.90
Transmembrane Helix	299	319	0.90
Cytoplasmic	320	326	0.77
Transmembrane Helix	327	345	0.92
Non-Cytoplasmic	346	350	0.83
Transmembrane Helix	351	369	0.94
Cytoplasmic	370	376	0.77
Transmembrane Helix	377	395	0.87
Non-Cytoplasmic	396	542	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPETRDHST AFRNLHSSSG EMKLRKRKST QYVIAQEKRS RRRDLLGENT YLVLFTIALR  60
   61 IFNCFLVQTS FVPDEYWQSL EVAHHMVFNY GYLTWEWTER LRGYTYPLIF ASIYKILHLL 120
  121 GKDSVQLLIW IPRLGQALLS AVADLRLYSL TKQLENQEVA RWVFFCQLCS WFTWYCCTRT 180
  181 LTNTMETALT AVALFYYPLE GSRSKNSVKY SLLVALACVV RPTALIPWVP LLFRHLYQEQ 240
  241 RKLHLTLHHF LPVGFITFSL SLIIDRIFFG QWTLVQFNFL KFNVLQNLGT FYGSHPWHWY 300
  301 FSQGFPVVLG THLPFFIHGC FLAPRRLNIL LLAVLWTLLV YSMLGHKEFR FIYPVLPFCM 360
  361 VFCGYSLAHL KAWRKAALSF LLLSNVLLAL YTGLVHQRGT LDVMSHIQKV CPRGPDPAPA 420
  421 SVFIMMPCHS TPYYSHVHCP LSMRFLQCPP DLTGKTQYLD EADTFYLNPL GWLQQEFHSN 480
  481 VSLPTHLVTF NVLEKEIHAF LTSGNYERTA TFFHTHWPER RTGSHIHVYE RRLTSRVSTG 540
  541 GN