YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109482563, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.26
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.80
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	108	0.88
Transmembrane Helix	109	130	0.82
Cytoplasmic	131	144	0.89
Transmembrane Helix	145	166	0.89
Non-Cytoplasmic	167	214	0.69
Transmembrane Helix	215	229	0.26
Cytoplasmic	230	243	0.48
Transmembrane Helix	244	262	0.61
Non-Cytoplasmic	263	277	0.81
Transmembrane Helix	278	299	0.92
Cytoplasmic	300	312	0.80
Transmembrane Helix	313	333	0.86
Non-Cytoplasmic	334	356	0.82
Transmembrane Helix	357	378	0.73
Cytoplasmic	379	478	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAFRVRRRV AAVLGGARDA PAAAEKPGCG AACSACRLQR HGLLRPARHS LQEILSGSLL  60
   61 RLGTMTVRGA ALAPDPASPT TTAASPSVSA TPEGSPTAME HPVFLMTTAA QATSGFFVWT 120
  121 ALLITCHQIY MHLRCYSRPN EQRHIVRILF IVPIYAFDSW LSLLFFTNDQ YYVYFGTVRD 180
  181 CYEAFVIYNF LSLCYEYLGG ESAIMSEIRG KAIESSCMYG TCCLWGKTYS IGFLRFCKQA 240
  241 TLQFCVVKPL MAVSTVILQA FGKYRDGDFD VTSGYLYVTI IYNISVSLAL YALFLFYFAT 300
  301 RELLSPYSPV LKFFMVKSVI FLSFWQGMLL AILEKCGAIP KINSARVSVG EGTVAAGYQD 360
  361 FIICIEMFFA ALALRHAFTY KVYADKRLDA QVPTYGPYGR CAPMKSISSS LKETMNPHDI 420
  421 VQDAIHNFSP AYQQYTQQST LEPGPTWRGG THSLSRSHSL SGARDNEKTL LLSSDDEF