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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109480619, gi...
Protein type: Transmembrane
Type Confidence: 0.54
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAATAAS APQQLSDEEL FSQLRRYGLS PGPVTESTRP VYLKKLKKLR EEEQQQQQHR  60
   61 AGGRGNKTRN SNNNNTAAAA SVAAAPAGMG VRPGSGDFAY LRTPAGLGRL SASAPESPAG 120
  121 GSGVAAAVPA AGSKVLLGFS SDESDVEASP REQAGGGGAR RDRAALQYRG LKAPPAPPVA 180
  181 GEATSGNSAE RRKPHSWWGA RRPVGPEPQL PSGSDGAAED VDEEVADGED RDPEAEEPLW 240
  241 GSRAVNGSRL LPYSCREHYS DSEEEDDGGD VASARQVLKD DSLSRHRPRR SHSKPFSALT 300
  301 AKSGGSRQET SVQGGGGLAM NDRAAAAGSL DRSRNLEEAA AEPGGGGGGG GCDQVDSIPR 360
  361 YRAGAKKLAP LLSPPSPDVD STLESPTGPL KTNNHIGGGG AFGVDSPSLY ANSIPPGAAA 420
  421 TAPGSLRINH ANHTGSNHTY LKNAYSKPKL CEPEEELLQQ FKREEVSPTG SFSAHYLSMF 480
  481 LLTAACLFFL ILGLTYLGMR GTGVPEDGRL SIKNPFDETF GKIQASEKNL MMSTLYKLHD 540
  541 RLAQIAGDHE CGRSSQRMLS VQEAAAYLKD LGPEYEDVFN TSLLWIFKNG KDVGIRCVGY 600
  601 GPEEDLTNIT DVQFLQSTRP QMPFWCRFRR AFITVTHRLL LLCLGVVLVC AVLRYMRYRW 660
  661 TKEEEETRQM YDMVVKIIDV LRSHNEACQE TKDLQPYMPI PHVRDSLIQP QDRKKMKKVW 720
  721 ERAVDFLAAN ESRVRTETRR VGGADFVVWR WVQPSASCDK TSVIPSKVWQ GQAFHLDRRN 780
  781 SPPNSLTPCL KIRNMFDPVM EIGDHWHLAI QEAILEKCSD NDGIVHIAVD RNSREGCVYV 840
  841 KCLSPGHAGK AFKALHGSWF DGKLVTVKYL RLDRYHHRFP QALTCSTPLK PSDKHMNSMS 900
  901 HLRLRTGLAN SQGSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle