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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109479244
Protein type: Transmembrane
Type Confidence: 0.54
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERPLSSLPT FAFSPLYLSR KEDTKKRRAA CLPRPPSRAA SPRLQGLDMG VLQVFAFGVL  60
   61 ALWGTRVCAQ EPEFSYGCAE GSCYPATGDL LIGRAQKLSV TSTCGLHKPE PYCIVSHLQE 120
  121 DKKCFICDSR DPYHETLNPD SHLIENVVTT FAPNRLKIWW QSENGVENVT VQLDLEAEFH 180
  181 FTHLIMTFKT FRPAAMLIER SSDFGKTWGV YRYFAYDCES SFPGISTGPM KKVDDIICDS 240
  241 RYSDIEPSTE GEVIFRALDP AFKIEDPYSP RIQNLLKITN LRIKFVKLHT LGDNLLDSRM 300
  301 EIREKYYYAV YDMVVRGNCF CYGHASECAP VDGFNEEVEG MVHGHCMCRH NTKGLNCELC 360
  361 MDFYHDLPWR PAEGRNSNAC KKCNCNEHSS SCHFDMAVFL ATGNVSGGVC DNCQHNTMGR 420
  421 NCEQCKPFYF QHPERDIRDP NLCEPCTCDP AGSENGGICD GYTDFSVGLI AGQCRCKLHV 480
  481 EGERCDVCKE GFYDLSAEDP FGCKSCACNP LGTIPGGNPC DSETGYCYCK RLVTGQRCDQ 540
  541 CLPQHWGLSN DLDGCRPCDC DLGGALNNSC SEDSGQCSCL PHMIGRQCNE VESGYYFTTL 600
  601 DHYIYEAEEA NLGPGVVVVE RRYIQDRIPS WTGPGFVRVP EGAYLEFFID NIPHSMEYEI 660
  661 LIRYEPQLPD HWEKAVITVQ RPGRIPTSSR CGNTVPDDDN QVVSLSPGSR YVVLPRPVCF 720
  721 EKGMNYTVRL ELPQYTASGS DVESPYTLID SLVLMPYCKS LDIFTVGGSG DGEVTNSAWE 780
  781 TFQRYRCLEN SRSVVKTPMT DVCRNIIFSI SALIHQAGLA CECDPQGSLS SVCDPNGGQC 840
  841 QCRPNVVGRT CNRCAPGTFG FGPNGCKPCD CHLQGSVSAF CDAVTGQCHC FQGIYARQCD 900
  901 RCLPGFWGFP SCQPCQCNGH AEDCDTVTGE CLSCQDYTTG HNCERCLAGY YGDPIIGSGD 960
  961 HCRPCPCPDG PDSGRQFARS CYQDPVTLQL ACVCDPGYIG KSCTXEAESG ERRCVFEVLV1020
 1021 SEEKMKSKRV KFTQDDPALS LQDGSXLNMS YHVXGSPTHC SWSLXGCCRK CVCNYLGTVR1080
 1081 EHCNGSDCHC DKTTGQCSCL PNVIGQNCDR CAPHTWQLAS GTGCEPCNCN AVHSFGPSCN1140
 1141 EFTGQCQCMP GFGGRTCSEC QELFWGDPDV ECRACDCDPR GIETPQCDQS TGQCVCVEGV1200
 1201 EGPRCDKCTR GYSGVFPDCT PCHQCFALWD VIIGELTNRT HKFLEKAKAL KISGVIGPYR1260
 1261 ETVDSVEKKV NEIRDILAQS PAAEPLKNIG ILFEEAEKLT KDVTEKMAQV EVKLSDTASR1320
 1321 SNSTAGELDA LQAEAGSLDK TVNELAEQLE FIKNSDIQGA LDSITKYFQI SLEAEKRVNA1380
 1381 STTDPNSTVE QSALTRDRVE DLMLERESQF KEKQEEQARL LDELAGKLQS LDLSAAAEMT1440
 1441 CGTHPGADCS ESECGGPNCR TDEGEKKCGG PGCGGLVTVA HSAWQKAMDF DRDVLNALAE1500
 1501 VEQLSKMVSE AKVRADEAKQ NAQDVLLKTN ATREKVDRSN EDLRNLIKQI RDFLTEDSAD1560
 1561 LDSIEAVANE VLKMEMPSTP QQLQNLTEDI RERVETLSQV EVILQQSAAD IARAELLLEE1620
 1621 AKRASKSATD VKVTADMVKE ALEEAEKAQV AAEKAIKQAD EDIQGTQNLL TSIESETAAS1680
 1681 EETLTNASQR ISKLERNVEE LKRKAAQNSG EADYIEKVVY SVKQSADEVK KTLDGELDEK1740
 1741 YKKVESLIAQ KTEESADARR KAELLQNEAK TLLAQANSKL QLLEDLERKY EDNQKYLEDK1800
 1801 AQELVRLEGE VRSLLKDISE KVAVYSTCL

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