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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109474381
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGCPLSSAF EMLSFVHWFC SALASAHPST SSAASSECKP HLHFDFPTSR TARSPQLHLA  60
   61 PRPGAQRAAR AATGRDAESS PDHAGLTAPL LLYANRRDLR LVDATNGKEN ATIVVGGLED 120
  121 AAAVDFVFGH GLIYWSDVSE EAIKRTEFNK TESVQNVVVS GLLSPDGLAC DWLGEKLYWT 180
  181 DSETNRIEVS NLDGSLRKVL FWQELDQPRA IALDPSSGFM YWTDWGEVPK IERAGMDGSS 240
  241 RFVIINTEIY WPNGLTLDYE ERKLYWADAK LNFIHKSNLD GTNRQAVVKG SLPHPFALTL 300
  301 FEDTLYWTDW NTHSILACNK YTGEGLREIH SNIFSPMDIH AFSQQRQPNA TNPCGIDNGG 360
  361 CSHLCLMSPV KPFYQCACPT GVKLLESGKT CKDGATELLL LARRTDLRRI SLDTPDFTDI 420
  421 VLQLEDIRHA IAIDYDPVEG YVYWTDDEVR AIRRSFIDGS GSQFVVTAQI AHPDGIAVDW 480
  481 VARNLYWTDT GTDRIEVTRL NGTMRKILIS EDLEEPRAIV LDPMAGYMYW TDWGEIPKIE 540
  541 RAALDGSDRV VLVNTSLGWP NGLALDYDEG TIYWGDAKTD KIEVMNTDGT GRRVLVEDKI 600
  601 PHIFGFTLLG DYVYWTDWQR RSIERVHKRS AEREVIIDQL PDLMGLKATS VHRVIGSNPC 660
  661 AEENGGCSHL CLYRPQGLRC ACPIGFELIS DMKTCIVPEA FLLFSRRADI RRISLETNNN 720
  721 NVAIPLTGVK EASALDFDVT DNRIYWTDIS LKTISRAFMN GSALEHVVEF GLDYPEGMAV 780
  781 DWLGKNLYWA DTGTNRIEVS KLDGQHRQVL VWKDLDSPRA LALDPAEGFM YWTEWGGKPK 840
  841 IDRAAMDGSE RTTLVPNVGR ANGLTIDYAK RRLYWTDLDT NLIESSNMLG LNREVIADDL 900
  901 PHPFGLTQYQ DYIYWTDWSR RSIERANKTS GQNRTIIQGH LDYVMDILVF HSSRQAGWNE 960
  961 CASSNGHCSH LCLAVPVGGF VCGCPAHYSL NADNRTCSAP TTFLLFSQKS AINRMVIDEQ1020
 1021 QSPDIILPIH SLRNVRAIDY DPLDKQLYWI DSRQNMIRKA QEDGGQGFTV VVSSVPNQNL1080
 1081 EIQPYDLSID IYSRYIYWTC EATNVIDVTR LDGRSVGVVL KGEQDRPRAI VVNPEKGYMY1140
 1141 FTNLQERSPK IERAALDGTE REVLFFSGLS KPVALALDSK LSRLFWADSD LRRIESSDLS1200
 1201 GANRIVLEDS NILQPVGLTV FENWLYWIDK QQQMIEKIDM TGREGRTKVQ ARIAQLSDIH1260
 1261 AVKELNLQEY RQHPCAQDNG GCSHICLVKG DGTTRCSCPM HLVLLQDELS CGEPPTCSPQ1320
 1321 QFTCFTGDID CIPVAWRCDG FTECEDHSDE LNCPVCSESQ FQCASGQCID GALRCNGDAN1380
 1381 CQDKSDEKNC EVLCLIDQFR CANGQCVGKH KKCDHNVDCS DRSDELDCYP TEEPAPQATN1440
 1441 TVGSVIGVIV TIFVSGTIYF ICQRMLCPRM KGDGETMTND YVVHGPASVP LGYVPHPSSL1500
 1501 SGSLPGMSRG KSMISSLSIM GGSSGPPYDR AHVTGASSSS SSSTKGTYFP AILNPPPSPA1560
 1561 TERSHYTMEF GYSSNSPSTH RSYSYRPYSY RHFAPPTTPC STDVCDSDYA PSRRMTSVAT1620
 1621 AKGYTSDLNY DSEPVPPPPT PRSQYLSAEE NYESCPPSPY TERSYSHHLY PPPPSPCTDS1680
 1681 S

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