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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109474079
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.23
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XLPPRSHSRC PGLLPLPLLL LLGAARAGAL EIQRRFPSPT PTNNFALDGT AGTVYLAAVN  60
   61 RLYQLSGANL SLEAEATVGP VPDSPLCHAP QLPQASCEHP RRLTDNYNKI LQLDPGQGLV 120
  121 VACGSIYQGL CQLRRRGNIS ALAVSFPPAA PTAEPVTVFP SMLNVAANHP NASTVGLVLP 180
  181 PASGTGGSRL LVGATYTGYG SAFFPRNRSL EDHRFENTPE ISIRSLDARG DLAKLFTFDL 240
  241 NPSDDNILKI KQGAKEQHKL GFVRAFLHPA VPPHSAHPYA YLALNSEARA GDKDSQARSL 300
  301 LARICLPRGA GGDAKKLTES YIQLGLQCAG GAGRGDLYSR LVSVFPAREQ FFAVFERPQG 360
  361 TPGARNAPAA LCAFRFADVQ AAIRAARTAC FVEPAPDVVA VLDSVVQGTG PACESKRNIQ 420
  421 LQPEQLDCGA AHLQHPLTIL QPLRASPVFR APGLTAVAVA NANNYTAVFL GTATGRLLKI 480
  481 SLNESMQVVS RRVLTVAYGE PVHHVMQFDP MDPGYLYLMT SHQMARVKVA ACEVHSTCGD 540
  541 CVGAADAYCG WCTLETRCTF KQDCANSSLP HFWTSASEGP SRCPAMTVLP SEIDVHRDYT 600
  601 GMILQISGSL PSLSGMEMAC DYGNGVRTVA RVPGPAYGHQ IAYCNLLPRA QFPPFPAGQD 660
  661 HVTVEMSVRV KGHNIVSANF TIYDCSRIGQ VYPHTACTSC LSTQWPCSWC IQLHSCVSNQ 720
  721 SRCQDSPNPT SPQDCPQIVP SPLAPVPTGG SQDILVPLTK AAFFHGTSLQ CSFGLEENFE 780
  781 AVWANDSLVR CNQVVLHTTQ KSQVFPLSLK LKGPPDRFLD SPNPMTVVVY NCAMGSPDCS 840
  841 QCLGREDLGH LCVWNDGCRL RGPLQPLSGT CPAPEIRAIE PLSGPLNGGT LLTIRGKNLG 900
  901 RRLSDVAHGV WIGNVACEPL ADRYTVSEEI VCATGPAPGA FSDVVTVNVS KEGRSREQFS 960
  961 YVLPRVHSLE PSMGPKAGGT RITIHGSDLN VGSMLQVLVN DTDPCTDLTR TATSITCTVP1020
 1021 RGTLPSPVPV CVRFESRGCV HGNLTFWYMQ NPVITAISPG RSPVSGGRTI TVAGERFHMV1080
 1081 QNVSMAVHHI GREPTFCKVL NSTLIICPSP GALSNASAPV DFFINGRAYA DEAAEELLDP1140
 1141 AEAQRGSRFR LDYLPNPQFS TAKREKWIKH HPGEPLTLVI HKEQDSLGLE SHEYHIKIGQ1200
 1201 VSCDIQIISD RVIHCSVNES LGTAEGQLPI TIQVGNFNQT IATLQLGGSE TAIVVSIVIC1260
 1261 SVLLLLSVVA LFVFCTKSRR AERYWQKTLL QMEEMESQIR EEIRKGFAEL QTDMTDLTKE1320
 1321 LNRSQGIPFL EYKHFVTRTF FPKCSSLYEE RYVLPSKTLN SQGGSPPQET HPLLGEWNIP1380
 1381 EHCRPSMEEG ISLFSSLLNN KHFLIVFVHA LEQQKDFAVR DRCSLASLLT IALHGKLEYY1440
 1441 TSIMKELLVD LIDASAAKNP KLMLRRTESV VEKMLTNWMS ICMYGCLRET VGEPFFLLLC1500
 1501 AIKQQINKGS IDAITGKARY TLNEEWLLRE NIEAKPRNLN VSFQGCGMDS LSVRAMDTDT1560
 1561 LTQVKEKILE AFCKNVPYSQ WPRAEDVDLE WFASSTQSYV LRDLDDTSVV EDGRKKLNTL1620
 1621 AHYKIPEGAS LAMSLTDKKD NTLGRVKDLD TEKYFHLVLP TDELVEPKKS HRQSHRKKVL1680
 1681 PEIYLTRLLS TKGTLQKFLD DLFKAILSIR EDKPPLAVKY FFDFLEEQAE KRGISDPDTL1740
 1741 HIWKTNSLPL RFWVNILKNP QFVFDIEKTD HIDACLSVIA QAFIDACSIS DLQLGKDSPT1800
 1801 NKLLYAKEIP EYRKIVQRYY KQIQDMTPLS EQEMNAHLAE ESRKYQNEFN TNVAMAEIYK1860
 1861 YAKRYRPQIM AALEANPTAR RTQLQYKFEQ VVALMENNIY ECYSEA

YRC Informatics Platform - Version 3.0
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