YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109474009
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSMAKIVSV LRRRRERSRA LVLPKCGVQV RVLFIHRALP GRSVRSLISQ RQEPRHEVGK  60
   61 RACGRLDLNS NFPGETPYFG CGGPRLRHTL SRVPSGAPAQ EGAGLAAARE GRLGKTATKP 120
  121 LVAEAAVRET RASRRSPPRR AQTARNYFSG AAAGPESQRR PHRAPQRVGA ATEPRGPAVG 180
  181 PLPALGAAPR EPSPPSGARC PGPEGAPGSA LPVGLSPQCP PVGWMGGRCE KFPASDSCEL 240
  241 TTAYQRLFSL LYSLLGSPLL GRPKRQAKPA ADEGFWDCSV CTFRNSAEAF KCSICDVRKG 300
  301 TSTRKPRINS QLVAQQVAQQ YATPPPPKKE KKEKVEKPDK EKPEKDKDIS PSVTKKNTNK 360
  361 KTKPKSDILK DPPSEANSIQ SANATTKTSE TNHTSRPRLK NVDRSTAQQL AVTVGNVTVI 420
  421 ITDFKEKTRS SSTSSSTVTS SAGSEQQNQS SSGSESTDKG SSRSSTPKGD MSAVNDESF

Type	Start	End	Confidence
Cytoplasmic	1	20	0.71
Transmembrane Helix	21	40	0.70
Non-Cytoplasmic	41	479	0.99