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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109470639, gi...
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFSEERAT MIAAGDLQEF VPFGRDHCKH HPNALNLQLR QLQPASELWS SDGAAGLVGS  60
   61 LQEVTIHEKQ KESWQLRKGV SEIGDAADYD EELYVAGNMV IWSKGSKSQA LAVYKAFTVD 120
  121 STVQQALWCD FIISQDKSEK IYKSHELEKC ICILQSSCMN MHSIDGKDYI ASLPFQVANV 180
  181 WATKYGLLFE RSSSSHEVPP SLPREPLPTM FSMLHPLDEI TPLVCKSGSL FGSSRVQYVV 240
  241 DPAVKIVFLN IDPSIVMTYD AVQNVHSVWT LRRVKPEEET AVLKFPEQAG TLQNAATSSS 300
  301 LTAHLRSLSK GESPVASPFQ NYSSIHSQSR SASSPSLHSR SPSISNMAAL SRAHSPALGV 360
  361 HSFSGVQRFN LSSHNQSPKR HSISHSPSGS FNDSFLAPET EPIVPELCID HLWTETLPNM 420
  421 REKNSQASKV FITTDLCGQK FLCFLVEAQL QLRCVKFQES NDKTQLIFGS VTNIHAKDAA 480
  481 PVEKIDTMLV LEGNGNLVLY TGVVRVGKVF IPGLPAPSLT MSNMMPRPST PLDGVSTPKP 540
  541 LSKLLGSMDE VVLLSPVPEL RDSSKLNDSL YNEDCTFQQL GTYIHSVRDP VHNRVTLELS 600
  601 NGSMVRITIP EVATSELVQT CLQAIKFILP KEVAVQVLVK WYNVHSAPGG PSCHSEWSLF 660
  661 VICLLNMMGY NTDRLAWTRS FDFEGSLSPV IAPKKARPSD TGSDDDWEYL LNSEYHHNVE 720
  721 SHLLNKSLCL NALEVTKTKD EDFPQNLSLD SSTLLFAHIP AIFFVLHLVY EELKLNTLMG 780
  781 EGICSLIDLL VQLARDLKLE PYLDHYYRDY PTLVKTTGQV CTIDQGQMGF MHHPSFFTSE 840
  841 PPSIYQWVSS CLKGEGTPPY PYLPGICERS RLVVLSIALY TLGDESCVSD ETSQYLSKVT 900
  901 LTPQKPQAEQ EENRFTFRQS ASVSVLAERL VVWMASVGFT LRDLETLPFG IALPIRDAIY 960
  961 HCREQPDSDW SEAVCLLIGR QDLSKQACEG NLPRGKSVLS SDVASGAEAE EEDDGMNDLN1020
 1021 HEVMSLIWSE DLRVQDVRRL LQSAQPVRVN VVQYPELSDH EFIEEKENRL LQLCQRTMAL1080
 1081 PVGRGMFTLF SYHPVPTEPL PIPKLNLTGR APPRNTTVDL NSGNIDVPPN MASWASFHNG1140
 1141 VAAGLKIAPA SQIDSAWIVY NKPKHAELAN EYAGFLMALG LNGHLTKLAT LNIHDYLTKG1200
 1201 HEMTSIGLLL GVSAAKLGTM DMSITRLLSI HVPALLPPTS TELDVPHNVQ VAAVVGIGLV1260
 1261 YQGTAHRHTA EVLLAEIGRP PGPEMEYCTD RESYSLAAGL ALGMVCLGHG SNLIGMSDLN1320
 1321 VPEQLYQYMV GGHRRFQTGM HREKHKSPSY QIKEGDTINV DVTCPGATLA LAMIYLKTNN1380
 1381 RSIADWLRAP DTMYLLDFVK PEFLLLRTLA RCLILWDDIL PNSKWVDSNV PQIIRENSIS1440
 1441 LSEIELPCSE DLNLETLSQA HVYIIAGACL SLGFRFAGSE NLSAFNCLHK FAKDFMNYLS1500
 1501 APNASVTGPY NLETCLSVVL LSLAMVMAGS GNLKVLQLCR FLHMKTGGEM NYGFHLAHHM1560
 1561 ALGLLFLGGG RYSLSTSNSS IAALLCALYP HFPAHSTDNR YHLQALRHLY VLAAEPRLLV1620
 1621 PVDVDTNTPC YALIEVTYKG TQWYEQTKEE LMAPTLLPEL HLLKQMKVKG PRYWELLIDL1680
 1681 SKGEQHLRSI LSKDGVLYVK LRAGQLSYKE DPMGWQSLLA QTVANRNSEA RAFKPETISS1740
 1741 FTSDPALLSF AEYFCKPTVS MGQKQEILDL FSSILYECVA QETPEMLPAY IAMDQALRSL1800
 1801 KKRDMSNTSD LWQIKLILEF FSSRSHQERQ QTYPKRGLFI NSEFLPVVKC TVDSTLDQWL1860
 1861 QAGGDVCVHA YLSGQPVEKS QLNMLACFLV YHSVPAPRHL PPLGLEGSTS FAELLFRFRH1920
 1921 LKMPVRALLR LAPVLLGNPQ PMVM

YRC Informatics Platform - Version 3.0
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