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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109469533, gi...
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEMDAMIP EREMKDFQFR ALKKVRIFDS PEELPKERSS VLTVSNKYGM LFAGGTNGLN  60
   61 VFPTKSLLIQ NKPGDDPNKI VDTIQGLNVP MKFPVHHLAL SCDNLTLSAC MMSSEYGSII 120
  121 AFFDVRTFSN QAKPLKRPFT YHKLSNGASG MVNDMKWNPT VPSMAAVCLA DGSISVLQVT 180
  181 DVVKVCATLP PSSGVTCVCW SPKGKQLAVG KQNGTVVQYL PTLQEKKVIP CPPFYEADHP 240
  241 VRVLDVLWIG TYVFTIVYAG ADGALETCPD VVMALLPKKE EKHPEIFVNF MEPCYSSCTE 300
  301 RQHHYYLSYI EEWDLVLAAS AASTEVSILA RQSDQTNWES WVLEDSSRAE LPVTDKSDDS 360
  361 LPVGVAIDYT NEVEVAINEE KTLPPAPVLL LLSTDGVLCP FYMINQNPGV RSLIKTLELI 420
  421 SAEGERQPKS SGSFPSTPPS PQAPQNLDAP ATASSPLPPV SAAPTATFPL PSAGGGPSVF 480
  481 SFGPSPFKSS SIPGEPPPYP TGSDSSRAAP ASGTPTFSFA PPSKGTLAPT PAVAPVPTSA 540
  541 APFTFGSSGF KPPLESTPMS SAPNTGMKPS FPPSTSSVKV NLNEKFTAVA SSAPVHSSTS 600
  601 IPSVLPFSSS PKPPASGPLS HPTPLPASPS SMPLKPSVSP SPSVGRSAQT APSSAPSTGQ 660
  661 KSPRVNPPVP KSGSSQARAL QPPVTEKQRH QWKESDPVMA GIGEEIAHFQ KELEELKART 720
  721 SKACFQVGTP EEMKMLRTES DDLHTFLFEI REATESLHGD ISTLKTTLLE GFAGVEEARE 780
  781 QHGRNHDSGY LHLLYKRPLD PKSEAQLQEI RRLHQYVKFA VQDVNDVLDL EWDRHLEQKK 840
  841 RQRRLIVPER ETLFNTLANN REIINQQRKR LNHLVDSLQQ LRLYNQTSPW NRPSTLSTQS 900
  901 DTPSFDSDLE HLLKTTIESH TKPSPRVPGK LSPAKQAQLR NFLAKRKTPP VRSTAPASLS 960
  961 RSAFLSQRYY EDLDEGSSAS SVAHPLEGED ARPTPTCREE EAVVPVPRHA PVVRTPSVQP1020
 1021 SLLPQAMPFA KPHLIHSSSP AAMSSSISTS ATKVIPQGAD TTMLATKTVK HGAPGPSHTV1080
 1081 AAPQAAAAAA LRRQMASQAP AVSTLTESTL KNVPQVVNVQ ELKSNPSPPS AAMGSSGPHS1140
 1141 AAKAPHAVLT PVAASQAKQG SLINSFKPSG PTPVSCQLSS GDKAVGPGTA KTESPVTSTP1200
 1201 STGQLNKPFS FASPGTFTFG TITPAPSSSF TATPGAAPPT KESNQLEAFS FGGGGKPFCE1260
 1261 TIPGNPPATG PPSAPSTSVT TTSLEDSAPT SSKPATPETP VSTASSKLET PPSKLGELLF1320
 1321 PSSLAGETLG SFSGLRVGQA EESTKPVSKA SSTNLAGAQP AKPSGFSFPA ASVLGKPVEP1380
 1381 SVTSSAPAAP VSALSASTSS SSATVFGSVP LTSAAPSGLM SFSGASLASS KASFSFGNQQ1440
 1441 TSSAAAAAAT PASTSVAPSL PASFPTLSFG GLLSSPSASS LPVSSGKITE EATPPAVPDK1500
 1501 SDHSEVSAST PSLPLQPPSA QLPQASLQTS DPVKKEPVPA QTTDSRPSSS ASLVASTEST1560
 1561 PVAPGGPDSK TEAVSPASTF AGPGPAVVAA VLLGAGSAAS EASGTPSTSS TVSSSTPTPA1620
 1621 TETAVFGTAT SGSSVFTQPP AASSSSAFNQ LSSNTATAPS ATPVFGQVAA SIASTAAATP1680
 1681 QASSSGFGSP AFGASAPGVF GQTAFGQSPA FGQATSSPAS GFSFSQPGFS SVPAFGQSVS1740
 1741 STPTSTSANV FGATSSTSSP GSFSFGQAST NTGGTLFGQN NPPAFGQSPG FGQGGSVFGS1800
 1801 TSATTSTAAP SGFSFCQASG FGSSNTGSVF GQAASSGGSV FGQSSTSSGS VFGSGNATRG1860
 1861 GGFFSGLGGK PSQDAANKNP FSSASGGFGS TPTPNTSNLF GNSGAKTFGG FGSSFGEQKP1920
 1921 AGTFSSGGGS VASQGFGFST PNKTGGFGAA PVFGSPPTFG GSPGFGGVPA FGSAPAFTSP1980
 1981 LGSTGGKVFG EGTAAASAGG FGFGSSSNTA SFGTLASQNA PTFGSLSQQT SGFGTPSSGF2040
 2041 SGFGSGTGAF TFGSSNSSVQ GFGGWRS

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