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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109470295
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAGSLERS FVELSGAERE RPRHFREFTV CDLGTANAAF GAVKYSESAG GFYYVESGKL  60
   61 FSITRNRFIH WKTSGDTLEL VEESLDLNLL NNAVRLKFQN YSLLPGGVHV SETQNHVIIL 120
  121 ILTNHTVHRL ILPHPSRMYR SELVTESQMQ SIFTDIGKVD FKDPCNYQLI PTVPGLSPSS 180
  181 TTSAAWLSSD GEALFALPSA SGGIFVLKLP PYDIPGIASV VELKQSSVMQ RLLTGWMPTA 240
  241 IRGDHGPSDR ALSLAVHCVE HDAFIFALCQ DHKLRMWSYK DQMCLMVADM LEYVPVNKDL 300
  301 RLTAGTGHKL RLAYSPSMGL YLGIYMHAPK RGQFCIFQLV STESSRYSLD HISSLFTSQE 360
  361 TLVDFALTST DIWALWHDAE NQTIVKYINF EHNVAGQWNP VFMQSLPEEE IVIRDDQDPR 420
  421 EMYLRSLLHQ DISXILHLAL XTRFSAGVLR GTWIFHGVNX KRKLLXLLKM SSKEVXPSMN 480
  481 SPRMNFVLYN RNSGASSMPA VSSIRKPSPT LLLYIXILSQ TWCAFXRKGT CLSWSHLPXX 540
  541 IIYISCLMST FXQRMRRPYR MMQMWHGMSY VLSNASGXLG SQLPWIWQFX WKPVVTTCSL 600
  601 QRRLQNTFWK IXSLLMXKMX WKTFVVNCKR SETPSMPLGF SYGKWIMKRK WRWKRDSIQL 660
  661 SLXMFEXIFP SSMVVAQQDI LCAEVCIKLP ALASXSAETS XSYSSCXQDX EMQXSXELVS 720
  721 SFKLSKTCCI AQLPCSCLIT SLSGQVSAWQ PMSQLTHWSL IYNICQYWNX LILVPXWQIN 780
  781 WSLALRQLWS YSSKKLQENI LYLISSLSPK PLXAKLDXIG LKWLLQLPAI CYSFYGLAIL 840
  841 VVSFXNVXWE IASMYNCRIT SNYCIPGVKS MLDHVALCWD GVTXLQEKYR RLWNVSVRQH 900
  901 RKWAKKNSXI AXSEQRTGRS CPPPSCSIMI RFYVCXTLLD CLSWLFSSLH QQLLKRVMTG 960
  961 KVRLLXEHAF SNIIWTWVTI AKHMRPXPKF LTPAGSXTVC GSWWSFFVNA PNCRILXSFP1020
 1021 MXICIMKLWE SLSRVPELWT LXLTITMNSS MLFTFTAITT EKLVQXCLNM VCVLAERFEL1080
 1081 SGDLRSKATV TWLLLIVYGL FVQSMRGLYS QPLGQCLIAL EHLLRGIMMA SAQLPQPIGR1140
 1141 LKFXNWKTSR KSVLXREFAS RWHGMIHQQL PLQEVHQQRR XARSWFRLAS LTLPYHSVRL1200
 1201 LSFHXHRSLK GLLSSALSCS LEEKQHREKP GPGXQPISSL LSSPPRSPVL QMKHGGYYQL1260
 1261 TWKDTKSRIT CITTVXLTSC YLMEFLCLIG LXIVTRKSML LSCFAFTXTM TFXKKPWIWS1320
 1321 LNMXMLYWEK DISTLELSFH CQQQPRWCGS HTLLLTSFSR LWERTVPTVT TLYCPRKFLT1380
 1381 NXKTTNKKST RQHEIYCTAG TC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle