YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109468832
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	416	0.56
Transmembrane Helix	417	438	0.74
Non-Cytoplasmic	439	503	0.46
Transmembrane Helix	504	527	0.82
Cytoplasmic	528	537	0.48
Transmembrane Helix	538	560	0.80
Non-Cytoplasmic	561	618	0.58
Transmembrane Helix	619	639	0.91
Cytoplasmic	640	699	0.56
Transmembrane Helix	700	721	0.84
Non-Cytoplasmic	722	746	0.53
Transmembrane Helix	747	767	0.91
Cytoplasmic	768	802	0.63
Transmembrane Helix	803	823	0.85
Non-Cytoplasmic	824	832	0.50
Transmembrane Helix	833	855	0.64
Cytoplasmic	856	875	0.92
Transmembrane Helix	876	896	0.90
Non-Cytoplasmic	897	902	0.67
Transmembrane Helix	903	920	0.84
Cytoplasmic	921	938	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELTTSRSP ETRPPPNLGE GCAEGGRQRV NTRERGRLRA LAHGQVQKAA WAEAGTPRLS  60
   61 GLRTRAAADP EQISPGEGRD FGCKRPHAAR LGARRGSQEC HRLLLRARLE QQSPEWSLLV 120
  121 TAATLGYFKN DTDDNPDVRE DSLGDEVFDT VNSSIVSGES IRFFVNVNLE VQPSKSDIEA 180
  181 ATGGCVLLHT SRKYLKLKNF EEEVRAHRDL DGFLAQASII LNETATSLDD VLRTMLNRFA 240
  241 QDPNHAEPDC DLDLLMAKLF TDAGGPMESK VHLLSDTIQG VTATVRGLQY EQSWLCIVCT 300
  301 MKSLQKRHVC ISRLVRPQNW GENSCEVRFV ILVLAPPKMK STKTAMEVAR TFATMFSDIT 360
  361 FRQKLLKTRT EEEFKEALVH QRQLLTMMMP RAAGHSMSSL HTHRHPRVRI IGKGKTVGKY 420
  421 VTTTLFLYFA CLLPTIAFGS LNDENTNGAI DVQKTIAGQS IGGLLYALFS GQPLVILLTT 480
  481 APLAIYTQVI RVICDDYNLD FNAFYAWTGL WNSFFLALYA FLNLSLLMNL FKRSTEEIIA 540
  541 LFISITFVLD AVKGMVKIFW KYYYGHHYHT KRTSSLASLL GISRSPNTSL HTALNTSFLA 600
  601 SPIEMTTASS PISTHSNQAT AVLSLLIMLG TLWLGYTLYQ FKKSPYLHPC VRETLSDCAL 660
  661 PIAVLSFSLI SSYGFQEIEM SKFRYNPSES LFEVAQIHSL SFKAISSAMG LGFLLSLLFF 720
  721 IEQNLVAALV NAPENRLVKG TAYHWDLLLL AIINTGLSLF GLPWIHAAYP HSPLHVRALA 780
  781 LVEERVENGH IYETIVNVKE TRLTALGASV LVGLSLLLLP FPLQWIPKPV LYGLFLYIAL 840
  841 TSLDGNQLFS RVALLLKEQT SYPPTHYIRR VPQRKIHYFT GLQILQLLLL CAFGMSSLPY 900
  901 MKMVFPLIMI AMIPIRYNLL PRIIEAKYLD VMDAEHRP