YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213385262, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.85
Transmembrane Helix	8	26	0.95
Cytoplasmic	27	37	0.83
Transmembrane Helix	38	60	0.91
Non-Cytoplasmic	61	78	0.76
Transmembrane Helix	79	99	0.93
Cytoplasmic	100	108	0.81
Transmembrane Helix	109	128	0.89
Non-Cytoplasmic	129	145	0.93
Transmembrane Helix	146	169	0.86
Cytoplasmic	170	284	0.96
Transmembrane Helix	285	304	0.89
Non-Cytoplasmic	305	341	0.89
Transmembrane Helix	342	361	0.93
Cytoplasmic	362	377	0.81
Transmembrane Helix	378	398	0.94
Non-Cytoplasmic	399	422	0.92
Transmembrane Helix	423	444	0.92
Cytoplasmic	445	455	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLIDSSIM ITSQILFFGF GWLFFMRQLF KDYEVRQYVV QVIFSVTFAF SCTMFELIIF  60
   61 EILGVLNSSS RYFHWKMNLC VILLILVFMV PFYIGYFIVS NIQLLHKQRL LFSCLLWLTF 120
  121 MYFFWKLGDP FPILSPKHGI LSIEQLISRV GVIGVTLMAL LSGFGAVNCP YTYMSYFLRN 180
  181 VTDTDILALE RRLLQTMDMI ISKKKRMAVT RRTMFQRGDV QNKPSGLWGM LKSVTASAPG 240
  241 SENLTLIQQE VDALEELSRQ LFLETADLYA TKERIEYSKT FKGKYFNFLG YFFSIYCVWK 300
  301 IFMATINIVL DRVGKTDPVT RGIEITVNYL GIQFDVKFWS QHISFILVGI IIVTSIRGLL 360
  361 ITLTKFFYAI SSSKSSNVIV LLLAQIMGMY FVSSVLLIRM SMPPEYRTII TEVLGELQFN 420
  421 FYHRWFDVIF LVSALSSILF LYLAHKQAPE KHMAP