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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109463833
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRGQARRL TAGKRGGSLS EPDHVSWSLG PIRGPIPRPT AAQLGHEPLS LERDHRGAGC  60
   61 DQSVLEGGRS VREPWASGTQ ALRKREGSKH SRFQQRLGKD GGGPKPPSFT TTKASRCTFP 120
  121 TNPSARPRLP RLARPECSHC ARASRRHARS QDPTELAGVV SAASAVASLR GSASGFALPP 180
  181 LRWGSRGSRS RAWGARRRGH GTAPALVTAG SGAARALSAS PAGGLALLLA GPGLLLPLLA 240
  241 LLLAAAAARI MSGRRCAGGG AACSSAVAEA VEPSARELFE ACRNGDVERV KRLVTPEKVN 300
  301 SRDTAGRKST PLHFAAGFGR KDVVEYLLQN GANVQARDDG GLIPLHNACS FGHAEVVNLL 360
  361 LQHGADPNAR DNWNYTPLHE AAIKGKIDVC IVLLQHGAEP TIRNTDGRTA LDLADPSAKA 420
  421 VLTGDYKKDE LLESARSGNE EKMMALLTPL NVNCHASDGR KSTPLHLAAG YNRVKIVQLL 480
  481 LQHGADVHAK DKGDLVPLHN ACSYGHYEVT ELLVKHGACV NAMDLWQFTP LHEAASKNRV 540
  541 EVCSLLLSYG ADPTLLNCHN KSAIDLAPTA QLKERLSYEF KGHSLLQAAR EADVTRIKKH 600
  601 LSLEMVNFKH PQTHETALHC AAASPYPKRK QICELLLRKG ANTNEKTKEF LTPLHVASEN 660
  661 AHNDVVEVVV KHEAKVNALD SLGQTSLHRA AHCGHLQTCR LLLSYGCDPN IISLQGLTAL 720
  721 QMGNENVQQL LQEGVSLGHS EADRQLLEAA KAGDVETVKK LCTVQSVNCR DIEGRQSTPL 780
  781 HFAAGYNRVS VVEYLLQHGA DVHAKDKGGL VPLHNACSYG HYEVAELLVK HGAVVNVADL 840
  841 WKFTPLHEAA AKGKYEICKL LLQHGADPTK KNRDGNTPLD LVKDGDTDIQ DLLRGDAALL 900
  901 DAAKKGCLAR VKKLSSPDNV NCRDTQGRHS TPLHLAAGYN NLEVAEYLLQ HGADVNAQDK 960
  961 GGLIPLHNAA SYGHVDVAAL LIKYNACVNA TDKWAFTPLH EAAQKGRTQL CALLLAHGAD1020
 1021 PTLKNQEGQT PLDLVSADDV SALLTAAMPP SALPTCYKPQ VLSGVRSPGA TADALSSGPS1080
 1081 SPSSLSAASS LDNLAGSFSE LSAVVSSSTT EGATGLERKE DSGIDFSITQ FIRNLGLEHL1140
 1141 MDIFEREQIT LDVLVEMGHK ELKEIGISAY GHRHRLIKGV ERLISGQQGL NPYLTLNNSG1200
 1201 SGTILIDLSP DDKEFQSVEE EMQSTVREHR DGGHAGGIFN RYSILKIQKV CNKKLWERYT1260
 1261 HRRKEVSEEN HNHANERMLF HGSPFVNAII HKGFDERHAY IGGMFGAGIY FAENSSKSNQ1320
 1321 YVYGIGGGTG CPVHKDRSCY ICHRQLLFCR VTLGKSFLQF SAMKMAHSPP GHHSVTGRPS1380
 1381 VNGLALAEYV IYRGEQAYPE YLITYQIVRP EGMGDG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle