YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109458597, gi...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPRLGTMRL ACMFSSILLF GAAGLLLFIS LQDPIELSPQ QFPGIKFSIR PQHPQHDSHL  60
   61 RIPTERVTRD SPSGSPRGLQ LQAPDQPGSH PKAAGSPLRL RQRRRRLLIK KMPAAGTMRG 120
  121 NNSSETFIQP RPRTVDSRWL SLHQTQQERK RVMQEACAKY RASSSRRAVT PRHVSRIFVE 180
  181 DRHRVLYCEV PKAGCSNWKR VLMVLAGLAS STADIQHNTV HYGSALKRLD TFDRQGIVHR 240
  241 LSTYTKMLFV REPFERLVSA FRDKFEHPNS YYHPVFGKAI LARYRANASR EALRTGSGVQ 300
  301 FPEFVQYLLD VHRPVGMDIH WDHVSRLCSP CLIDYDFVGK FESMEDDANF FLRLIHAPGN 360
  361 LTFPRFKDRH SEEARTTSRI THQYFAQLSS LQRQRTYDFY YMDYLMFNYS KPFSDLY

Type	Start	End	Confidence
Cytoplasmic	1	9	0.71
Transmembrane Helix	10	31	0.73
Non-Cytoplasmic	32	417	0.99