YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109458504
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	79	0.69
Transmembrane Helix	80	114	0.53
Non-Cytoplasmic	115	115	0.28
Transmembrane Helix	116	150	0.60
Cytoplasmic	151	151	0.17
Transmembrane Helix	152	186	0.59
Non-Cytoplasmic	187	187	0.31
Transmembrane Helix	188	222	0.60
Cytoplasmic	223	223	0.21
Transmembrane Helix	224	257	0.62
Non-Cytoplasmic	258	271	0.46
Transmembrane Helix	272	299	0.72
Cytoplasmic	300	301	0.49
Transmembrane Helix	302	330	0.70
Non-Cytoplasmic	331	334	0.54
Transmembrane Helix	335	369	0.59
Cytoplasmic	370	370	0.30
Transmembrane Helix	371	402	0.64
Non-Cytoplasmic	403	406	0.39
Transmembrane Helix	407	441	0.61
Cytoplasmic	442	442	0.24
Transmembrane Helix	443	477	0.61
Non-Cytoplasmic	478	478	0.34
Transmembrane Helix	479	513	0.60
Cytoplasmic	514	514	0.22
Transmembrane Helix	515	543	0.61
Non-Cytoplasmic	544	544	0.32
Transmembrane Helix	545	579	0.61
Cytoplasmic	580	580	0.20
Transmembrane Helix	581	615	0.60
Non-Cytoplasmic	616	616	0.30
Transmembrane Helix	617	639	0.62
Cytoplasmic	640	640	0.20
Transmembrane Helix	641	675	0.61
Non-Cytoplasmic	676	676	0.30
Transmembrane Helix	677	704	0.58
Cytoplasmic	705	706	0.27
Transmembrane Helix	707	729	0.72
Non-Cytoplasmic	730	731	0.29
Transmembrane Helix	732	766	0.59
Cytoplasmic	767	767	0.19
Transmembrane Helix	768	796	0.61
Non-Cytoplasmic	797	797	0.28
Transmembrane Helix	798	831	0.61
Cytoplasmic	832	832	0.21
Transmembrane Helix	833	861	0.59
Non-Cytoplasmic	862	863	0.35
Transmembrane Helix	864	892	0.62
Cytoplasmic	893	893	0.28
Transmembrane Helix	894	919	0.63
Non-Cytoplasmic	920	929	0.46
Transmembrane Helix	930	957	0.62
Cytoplasmic	958	959	0.34
Transmembrane Helix	960	985	0.63
Non-Cytoplasmic	986	1001	0.50
Transmembrane Helix	1002	1026	0.75
Cytoplasmic	1027	1162	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVSLRHSG SVTLLPPLPT PASRWFLQFV FPDHWSTKGR AVLGTAPVAA TARWPQQEEQ  60
   61 AKRTDTSAVV YPSALVYPSA LVYPSALVYP SALVYPSALV YPSALVYPSA LVYPSALVYP 120
  121 SALVYPSALV YPSALVYPSA LVYPSALVYP SAVVYPSAVV YPSALVYPSA LVYPSALVYP 180
  181 SALVYPSALV YPSALVYPSA VVYPSALVYP SALVYPSALV YPSALVYPSA LVYPSALVYP 240
  241 SALVYPSALV YPSALVYPSA LVYPSALVYP SALVYPSVLV YASVLVYPSV LVYPSVLVYT 300
  301 SLCPFRIFVL FMVYPSALVY PSVLVYPSAV VYPSALVYPS ALVYPSVLVY PSALVYPSAL 360
  361 VYPSALVYPS AVVYPSALVY PSVLVYPSVL VYPSALVYPS ALVYPSALVY PSAVVYPSAL 420
  421 VYPSALVYPS VLVYPSALVY PSALVYPSAL VYPSAVVYPS ALVYPSVLVY PSALVYPSAV 480
  481 VYPSALVYPS VLVYPSAVVY PSALVYPSAL VYPSALVYPS ALVYPSAVVY PSALVYPSAL 540
  541 VYPSALVYPS ALVYPSALVY PSALVYPSAL VYPSALVYPS ALVYPSALVY PSAVVYPSAL 600
  601 VYPSVLVYPS AVVYPSALVY PSALVYPSVL VYPSALVYPS ALVYPSALVY PSAVVYPSAL 660
  661 VYPSVLVYPS VLVYPSALVY PSALVYPSAL VYPSAVVYPS ALVYPSALVY PSATGVPICA 720
  721 VVYPSALVYP SVLVYPSVLV YPSALVYPSA LVYPSALVYP SAVVYPSALV YPSALVYPSV 780
  781 LVYPSALVYP SALVYPSALV YPSAVVYPSA LVYPSVLVYP SALVYPSAVV YPSALVYPSV 840
  841 LVYPSAVVYP SALVYPSALV YPSALVYPSA LVYPSAVVYP SALVYPSALV YPSALVYPSA 900
  901 LVYPSALVYP SALVYPPALV YPSVLMYPPV LVYPPVLVYP SVLVYPPVLV YPPVLVYPPV 960
  961 LVYPPVLVYP SALVYPSVLV YPPVLVYPSV LVYPSVLVYP SVLVYASVLV YPSVLVYPSV1020
 1021 LLLSTVCRGG PSGRVRATDR DAAVMSRLSR LQRQVLSLYR ELLRAGRGKP GAEARVRAEF1080
 1081 RQHASLPRSD VLRIEYLYRR GRRQLQLLRS GHATAMGTFV RPRGPTEEPV DATAPGNRLD1140
 1141 DSDALKNPCE GTGARETRSD GR