YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109128357
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDVGLETQ LCSEQFGSGE ARGCRAAADG SLQWEVGGWR WWGLSRAFTV KPEGRDAGEV  60
   61 GAPRAASPPL SGLQAVFLPQ GFPDSVSPDY LPYQLWDSVQ AFASSLSGSL ATQAVLLGIG 120
  121 VGNAKATVSA ATATWLVKDS TGMLGRIVFA WWKGSKLDCN AKQWRLFADI LNDVAMFLEI 180
  181 MAPVYPICFT MTVSTSNLAK CIVSVAGGAT RAALTVHQAR RNNMADVSAK DSSQETLVNL 240
  241 AGLLVSLLML PLVSGCPGFS LGCFFFLTAL HIYANYRAVR SLVMETLNEG RLRLVLKHYL 300
  301 QRGEVLDPTA ANRMEPLWTG FWPAPSLSLG VPLHRLVSSV FELQQLVEGH QEPYLLCWDQ 360
  361 SRNQVQVVLN QKAGPKTVLR AATHGLMLGA LQGDGPLPAE LEELRNQVRA GPKKESWVIV 420
  421 KETHQVLDML FPKFLKGLQD AGWKTEKHQL EVDEWRATWL LSPEKKVL

Type	Start	End	Confidence
Cytoplasmic	1	173	0.55
Transmembrane Helix	174	189	0.41
Non-Cytoplasmic	190	246	0.63
Transmembrane Helix	247	274	0.79
Cytoplasmic	275	468	0.59