YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109127279
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPEPRGWEW NGSGNVQLRV GLWCPLLVLR SIAPSRAGPC SLADWRLNPR VDPEKRLAPL  60
   61 GLPPGGSHLL SRAFAPVPSP GLLGHLSHDL GPKVTPKPLF VACSSQFIPS CFSAPGPAPS 120
  121 PGPGHPVPPW PPCMDACPPS VLLVVLWLAT CQGFLSSYSL WAPGPLPCLS PALARHRTVE 180
  181 RLAGGQGESL SPGEVWEGSR HSSHSPLQPS RPPPESPRPS SVPPALVFIK HGLAASTPGL 240
  241 QAESDLFSQG PPGASWAYSQ AAVPKLHLGV LAPAGLRTAV GSPHLSPTAL GAAYGTAKSG 300
  301 TGIAAMSVMR PELIMKSIIP VVMAGIIAIY GLVVAVLIAN SLNDDISLYR SFLQLGAGLS 360
  361 VGLSGLAAGF AIGIVGDAGV RGTAQQPRLF VGMILILIFA EVLGLYGLIV ALILSTK

Type	Start	End	Confidence
Cytoplasmic	1	98	0.65
Transmembrane Helix	99	116	0.32
Non-Cytoplasmic	117	139	0.52
Transmembrane Helix	140	156	0.51
Cytoplasmic	157	317	0.65
Transmembrane Helix	318	339	0.94
Non-Cytoplasmic	340	354	0.72
Transmembrane Helix	355	376	0.90
Cytoplasmic	377	388	0.68
Transmembrane Helix	389	414	0.88
Non-Cytoplasmic	415	417	0.75